Clone MXO02238 Report

Search the DGRC for MXO02238

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:38
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG1847-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02238.3prime Sequence

381 bp (321 high quality bases) assembled on 2007-01-19

> MXO02238.3prime
ATGGTCTAGAAAGCTTGCGAAGCGCTTCTGCATGTGAATGCGATCCTGGA
CGTTACGTGCCTGCTGCTGATCCTCGATGGACTTGAGCTCCTTAGACCCG
GTCGACTTGAGGCTGGCGTCCAAGGCCAAGGCGTCGAGGAAGTCGCGACG
TGCCTGTGCTGGATTCCAGGCACCCGCATGGGCCTTGGCCCGACGAAAAA
GTGCCTTGACATTGCGCGGATCCAGGGTGAGCACCTCGTTGCAGTGCTCG
ATCTCAGCGTAGAAGTCGCCGGCGATCAACCGACATTGCGCGTAGTTCAA
CAACAGCGGTGTCTTGATGGCCGCCATTTTCTGCCACTCCTCGCCCTGCG
GCTTCTCCTTTAGCATCAGCTGCTCCACTTT

MXO02238.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-PA 963 CG1847-RA 653..955 326..24 1465 99.3 Minus
CG1847-PB 996 CG1847-RB 686..988 326..24 1465 99.3 Minus
CG1847-PA 963 CG1847-RA 601..648 378..331 190 95.8 Minus
CG1847-PB 996 CG1847-RB 634..681 378..331 190 95.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-RC 1776 CG1847-RC 678..1037 378..19 1680 97.8 Minus
CG1847-RA 1776 CG1847-RA 678..1037 378..19 1680 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11870070..11870429 378..19 1680 97.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:21:27 has no hits.

MXO02238.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:39 Download gff for MXO02238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1847-PB 630..996 18..381 96   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:00 Download gff for MXO02238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 674..1037 19..381 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:25 Download gff for MXO02238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 674..1037 19..381 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:25 Download gff for MXO02238.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11870066..11870429 19..381 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:00 Download gff for MXO02238.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11764099..11764462 19..381 97   Minus

MXO02238.5prime Sequence

846 bp (800 high quality bases) assembled on 2007-01-19

> MXO02238.5prime
CAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCATACGAAAG
GAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCGGGCACCAG
GGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCGCATCATCG
ATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGGGGAAGAAG
TTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCCCTTAACGA
AGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATATCCTTTTA
TATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGCGACGTCAC
TGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACCGACCTGGA
TGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGAACTGTTCT
CCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGATGTCCGAC
GACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGCAACAACTT
CTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCGCGAGGCTG
TCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACGACGAGGAG
TGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAACTACGCGCA
ATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCACTGCAACG
AGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTCGTCGGGCC
AAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGCGACT

MXO02238.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-PA 963 CG1847-RA 1..838 9..846 4190 100 Plus
CG1847-PB 996 CG1847-RB 126..871 101..846 3730 100 Plus
CG1847-PB 996 CG1847-RB 1..93 9..101 465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-RC 1776 CG1847-RC 78..915 9..846 4190 100 Plus
CG1847-RA 1776 CG1847-RA 78..915 9..846 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11869739..11870307 278..846 2845 100 Plus
X 23542271 X 11869481..11869658 101..278 890 100 Plus
X 23542271 X 11869247..11869343 9..105 485 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:50:21 has no hits.

MXO02238.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:39 Download gff for MXO02238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1847-PA 1..838 9..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:50 Download gff for MXO02238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 70..915 1..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:37 Download gff for MXO02238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 70..915 1..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:37 Download gff for MXO02238.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11869239..11869339 1..101 97 -> Plus
X 11869482..11869658 102..278 100 -> Plus
X 11869740..11870307 279..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:50 Download gff for MXO02238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11763272..11763372 1..101 97 -> Plus
arm_X 11763515..11763691 102..278 100 -> Plus
arm_X 11763773..11764340 279..846 100   Plus