MXO02238.3prime Sequence
381 bp (321 high quality bases) assembled on 2007-01-19
> MXO02238.3prime
ATGGTCTAGAAAGCTTGCGAAGCGCTTCTGCATGTGAATGCGATCCTGGA
CGTTACGTGCCTGCTGCTGATCCTCGATGGACTTGAGCTCCTTAGACCCG
GTCGACTTGAGGCTGGCGTCCAAGGCCAAGGCGTCGAGGAAGTCGCGACG
TGCCTGTGCTGGATTCCAGGCACCCGCATGGGCCTTGGCCCGACGAAAAA
GTGCCTTGACATTGCGCGGATCCAGGGTGAGCACCTCGTTGCAGTGCTCG
ATCTCAGCGTAGAAGTCGCCGGCGATCAACCGACATTGCGCGTAGTTCAA
CAACAGCGGTGTCTTGATGGCCGCCATTTTCTGCCACTCCTCGCCCTGCG
GCTTCTCCTTTAGCATCAGCTGCTCCACTTT
MXO02238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 963 | CG1847-RA | 653..955 | 326..24 | 1465 | 99.3 | Minus |
CG1847-PB | 996 | CG1847-RB | 686..988 | 326..24 | 1465 | 99.3 | Minus |
CG1847-PA | 963 | CG1847-RA | 601..648 | 378..331 | 190 | 95.8 | Minus |
CG1847-PB | 996 | CG1847-RB | 634..681 | 378..331 | 190 | 95.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 678..1037 | 378..19 | 1680 | 97.8 | Minus |
CG1847-RA | 1776 | CG1847-RA | 678..1037 | 378..19 | 1680 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11870070..11870429 | 378..19 | 1680 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:27 has no hits.
MXO02238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:39 Download gff for
MXO02238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PB | 630..996 | 18..381 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:00 Download gff for
MXO02238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 674..1037 | 19..381 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:25 Download gff for
MXO02238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 674..1037 | 19..381 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:25 Download gff for
MXO02238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11870066..11870429 | 19..381 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:00 Download gff for
MXO02238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11764099..11764462 | 19..381 | 97 | | Minus |
MXO02238.5prime Sequence
846 bp (800 high quality bases) assembled on 2007-01-19
> MXO02238.5prime
CAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCATACGAAAG
GAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCGGGCACCAG
GGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCGCATCATCG
ATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGGGGAAGAAG
TTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCCCTTAACGA
AGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATATCCTTTTA
TATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGCGACGTCAC
TGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACCGACCTGGA
TGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGAACTGTTCT
CCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGATGTCCGAC
GACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGCAACAACTT
CTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCGCGAGGCTG
TCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACGACGAGGAG
TGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAACTACGCGCA
ATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCACTGCAACG
AGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTCGTCGGGCC
AAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGCGACT
MXO02238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 963 | CG1847-RA | 1..838 | 9..846 | 4190 | 100 | Plus |
CG1847-PB | 996 | CG1847-RB | 126..871 | 101..846 | 3730 | 100 | Plus |
CG1847-PB | 996 | CG1847-RB | 1..93 | 9..101 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 78..915 | 9..846 | 4190 | 100 | Plus |
CG1847-RA | 1776 | CG1847-RA | 78..915 | 9..846 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870307 | 278..846 | 2845 | 100 | Plus |
X | 23542271 | X | 11869481..11869658 | 101..278 | 890 | 100 | Plus |
X | 23542271 | X | 11869247..11869343 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:21 has no hits.
MXO02238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:39 Download gff for
MXO02238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..838 | 9..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:50 Download gff for
MXO02238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 70..915 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:37 Download gff for
MXO02238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 70..915 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:37 Download gff for
MXO02238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869239..11869339 | 1..101 | 97 | -> | Plus |
X | 11869482..11869658 | 102..278 | 100 | -> | Plus |
X | 11869740..11870307 | 279..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:50 Download gff for
MXO02238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763272..11763372 | 1..101 | 97 | -> | Plus |
arm_X | 11763515..11763691 | 102..278 | 100 | -> | Plus |
arm_X | 11763773..11764340 | 279..846 | 100 | | Plus |