MXO02239.3prime Sequence
357 bp (357 high quality bases) assembled on 2007-01-19
> MXO02239.3prime
ATGGTCTAGAAAGCTTGCTTCCGCGGCCAGCACTTGGCAAGGGTTTGCGC
TGAAGTGCTCGAAAGGGAAAAGCAATACACTATCCAAATAGCTAAGAAGT
GAAATGTACTGAACCACACTGCGTATACTTACTCGGTCGTTTTTCCTTGC
CCTGTTGCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTCA
GCCCGCAGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCTG
GGGATTTTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCGA
TTCCATCAACGCTGTCCGGAGACGCTGGCTCGGGATCCGCAAATCTGGCA
TGTCGAC
MXO02239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-PC | 336 | CG9368-RC | 1..329 | 351..23 | 1645 | 100 | Minus |
| CG9368-PA | 549 | CG9368-RA | 4..225 | 352..131 | 1110 | 100 | Minus |
| CG9368-PB | 534 | CG9368-RB | 4..223 | 352..133 | 1100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 352..19 | 1655 | 99.7 | Minus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 352..131 | 1110 | 100 | Minus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 352..133 | 1100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 352..151 | 1010 | 100 | Minus |
| 3L | 28110227 | 3L | 19602039..19602174 | 154..19 | 665 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:10 has no hits.
MXO02239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:40 Download gff for
MXO02239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-PC | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:39 Download gff for
MXO02239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 140..477 | 19..357 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:54 Download gff for
MXO02239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 140..477 | 19..357 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:54 Download gff for
MXO02239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601772..19601976 | 152..357 | 98 | -> | Minus |
| 3L | 19602042..19602174 | 19..151 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:39 Download gff for
MXO02239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594872..19595076 | 152..357 | 98 | -> | Minus |
| arm_3L | 19595142..19595274 | 19..151 | 99 | | Minus |
MXO02239.5prime Sequence
357 bp (357 high quality bases) assembled on 2007-01-19
> MXO02239.5prime
CAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCCGGACAGCG
TTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTTCAAG
CAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATGTGCT
CCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAGAAAT
CGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGTGTGGTTCA
GTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTTCCCTTTCG
AGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAGCAAGCTTT
CTAGACC
MXO02239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-PC | 336 | CG9368-RC | 1..333 | 9..341 | 1665 | 100 | Plus |
| CG9368-PA | 549 | CG9368-RA | 4..225 | 8..229 | 1110 | 100 | Plus |
| CG9368-PB | 534 | CG9368-RB | 4..223 | 8..227 | 1100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 8..341 | 1670 | 100 | Plus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 8..229 | 1110 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 8..227 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 8..209 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 19602039..19602174 | 206..341 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:19 has no hits.
MXO02239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:40 Download gff for
MXO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-PC | 1..336 | 9..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:44 Download gff for
MXO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 138..477 | 1..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:30 Download gff for
MXO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 138..477 | 1..341 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:30 Download gff for
MXO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601770..19601976 | 1..208 | 98 | -> | Plus |
| 3L | 19602042..19602174 | 209..341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:44 Download gff for
MXO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594870..19595076 | 1..208 | 98 | -> | Plus |
| arm_3L | 19595142..19595274 | 209..341 | 100 | | Plus |
