Clone MXO02241 Report

Search the DGRC for MXO02241

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:41
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02241.3prime Sequence

345 bp (345 high quality bases) assembled on 2007-01-19

> MXO02241.3prime
ATGGTCTAGAAAGCTTGCGAAAGGAAGAAGGACCCCGCAGACCTCGATGT
CCTCGGTAAACACTTTACGGCGTCTACTCGAAATGTATCTCATGGATGCG
AAAGCCCGGCCCGGCACGGCCCGGCCCGGCGTTGCTGACTCATTTTCCTT
GAGTTCCGAACAGGTTGGCCGACTCACACTTCCACACACATCCGCACCCC
TGCAATCCGGACTCAAACAGTCGCACTCAGATACAAATGCAAATGCCCAC
ACAACTGCGCAAACATTGCGAAAAACATCTACTTGGGGTTCGGGAACAAC
AACTACGCGCAAGCGGAATGAAATGCCCTGAAATTGCATGTCGAC

MXO02241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30017-PA 324 CG30017-RA 1..321 339..19 1605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:20:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10871266..10871587 19..340 1610 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:20:14 has no hits.

MXO02241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:41 Download gff for MXO02241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30017-PA 1..324 16..339 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:35 Download gff for MXO02241.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 12..345 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:35 Download gff for MXO02241.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 12..345 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:56 Download gff for MXO02241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 12..345 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:56 Download gff for MXO02241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 12..345 97   Plus

MXO02241.5prime Sequence

345 bp (345 high quality bases) assembled on 2007-01-19

> MXO02241.5prime
CAGTCGACATGCAATTTCAGGGCATTTCATTCCGCTTGCGCGTAGTTGTT
GTTCCCGAACCCCAAGTAGATGTTTTTCGCAATGTTTGCGCAGTTGTGTG
GGCATTTGCATTTGTATCTGAGTGCGACTGTTTGAGTCCGGATTGCAGGG
GTGCGGATGTGTGTGGAAGTGTGAGTCGGCCAACCTGTTCGGAACTCAAG
GAAAATGAGTCAGCAACGCCGGGCCGGGCCGTGCCGGGCCGGGCTTTCGC
ATCCATGAGATACATTTCGAGTAGACGCCGTAAAGTGTTTACCGAGGACA
TCGAGGTCTGCGGGGTCCTTCTTCCTTTCGCAAGCTTTCTAGACC

MXO02241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG30017-PA 324 CG30017-RA 1..321 9..329 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:24:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10871266..10871587 329..8 1610 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:24:20 has no hits.

MXO02241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:41 Download gff for MXO02241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30017-PA 1..324 9..332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:06 Download gff for MXO02241.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 4..336 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:06 Download gff for MXO02241.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10871260..10871589 4..336 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:23 Download gff for MXO02241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 4..336 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:23 Download gff for MXO02241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758765..6759094 4..336 98   Minus