MXO02242.3prime Sequence
738 bp (677 high quality bases) assembled on 2007-01-19
> MXO02242.3prime
ATGGTCTAGAAAGCTTGCCTTTTGCTTCTCCTCCTGTTTTTCGGTAGCGG
GATCTGTGTTCTCATCGCGGGCCACTGAAGTTGGGGTTTCGGGATCGCTG
GCCTTCTTCTCGCTGGCGGAGGGTTTGCCACCCATGGTGGCACCGGGGGG
CAGACTCTTCTCCAGAGCACGCACAAAATCCTCTAGATTGCCAGAGAAGG
CGGCGGCCACTGCTTCGTTGGACAACTCGAATTGCTTGATCACAGGTCCC
AGCTGGGCCGATTGCAGGGCACTGGAGAACTGGGCCAGAGCCTGCTGGAA
CTGCGGGGAGGTGATATTGTCCTTGATCTGCTGCTTGCGATCATCGTCCA
CATCCTCCGACTCGGGCAGGTGCACGATCAGCGTCTTGACATGCTCCGGA
TCGGCAATTATCTGATTGATGGCATCGGCGCCGGGTAGGGCCGTCGATAG
GTCAATATTCAGGGATCGTCCGGGGGCATCCGCATCAACGGAGGAGCCGG
CACCTTCGCCGACCTGCGAGTTCACATTGCTGCTGCTGCGGCTGCTGCCC
GATTTCGATGGAGCGCTCGGAGTGCGCGGCACACTGACGTTTTCGGGCGT
CTGCAAGGCCGATGCCCCACCGCCACCCGATGAGGAGGTGTTGCGCGACG
AGGGCGTCCGGGAGTTCATTTGGCCCAGCAGCGAGCTGAGACCACCCATC
TGGCCAACGCCGCCGAAGAGCTGCATCAGCTGCTGCTG
MXO02242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13349-PA | 1170 | CG13349-RA | 448..1167 | 738..19 | 3600 | 100 | Minus |
| CG13349-PB | 1170 | CG13349-RB | 448..1167 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RF | 1390 | CG13349-RF | 568..1287 | 738..19 | 3600 | 100 | Minus |
| Rpn13-RB | 1390 | CG13349-RB | 568..1287 | 738..19 | 3600 | 100 | Minus |
| Rpn13-RA | 1377 | CG13349-RA | 555..1274 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13958648..13959100 | 19..471 | 2265 | 100 | Plus |
| 2R | 25286936 | 2R | 13959204..13959398 | 470..664 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 13959568..13959641 | 665..738 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:02 has no hits.
MXO02242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:42 Download gff for
MXO02242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13349-PB | 448..1170 | 18..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:22 Download gff for
MXO02242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RA | 555..1280 | 11..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:09 Download gff for
MXO02242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RA | 555..1280 | 11..738 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:09 Download gff for
MXO02242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13958642..13959099 | 11..470 | 99 | <- | Plus |
| 2R | 13959205..13959398 | 471..664 | 100 | <- | Plus |
| 2R | 13959568..13959641 | 665..738 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:22 Download gff for
MXO02242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9846147..9846604 | 11..470 | 99 | <- | Plus |
| arm_2R | 9846710..9846903 | 471..664 | 100 | <- | Plus |
| arm_2R | 9847073..9847146 | 665..738 | 100 | | Plus |
MXO02242.5prime Sequence
884 bp (833 high quality bases) assembled on 2007-01-19
> MXO02242.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
AAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCTGGAAAAACGCTGGCCGCG
MXO02242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:34:57 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:20:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 22:20:19 has no hits.
Blast to na_te.dros performed on 2014-11-28 22:20:20 has no hits.
MXO02242.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:05:38 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:05:38 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:42:57 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:42:57 has no hits.
