MXO02243.3prime Sequence
773 bp (734 high quality bases) assembled on 2007-01-19
> MXO02243.3prime
ATGGTCTAGAAAGCTTGCTTCCTGATTCAGGTTCTTGATCACGTAATTAA
CAATGAGGGCAAAAATTGCAAAGCAGATAATGATCACCAGGTTTGAATAG
ACGGACTGCCAGTTTAGATAGGAGTTCCGTGCACTATTCTGGACCGCCGC
TCCTCCGCCGCTGGCCAAATCCGCCTGACCCGCCGCCCCGCCATCGATTG
CGTCCGCTGCATTCAGTGGATTGGCCAAGCCGCCCACCGCCAGATTGCCA
TCCGCAGATGCCAGGCTCGCTCCGTTGGCCAGTCCGTTGGAACGCTTTAC
TCCATTGGCAGCGGGTCCGTCCACAGCAGCTGCCGCCTGTGTTCCTCGCA
GCCGCTGCTTGATCTCTTCGACTATCTCCGGAAACAGCTCACAGAAGTTG
GTGTTGCGCAGGTTAAATGCTAGTGATTTTTGAGCAAACATTTGCTTGTC
ATAGTTCGATGATTCGATGGATCCGAGTGTGGGTGTGCTCTCCAGCATGA
AGCTCAGCAGTCCAGTGAGAATGGTGCCTACGCACCAAGTCGGGTTCCAA
GTGTCCGGATGAAAATCTGATATACTCAAACACAGTCTGGTGTTGGTCTT
GAAGCGACCGTTCGGCGTCAGCATGTAGATGGATGGCGGCTTGAATGGGA
ACTCGCGCGGAAAGAGCAGGGTGCCGTGGTAGTAGCCGCCGTAGTAGGGC
GAGTCCTCCGGCCCCTTGACGCAGTAGTGCCACTCGAGGATGTTGTTGGG
CAGCGGCTCGGCGGTTATGTACG
MXO02243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 95..849 | 773..19 | 3775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 637..1391 | 773..19 | 3775 | 100 | Minus |
| CG5823-RA | 1850 | CG5823-RA | 698..1452 | 773..19 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532723..17533200 | 19..496 | 2390 | 100 | Plus |
| 3R | 32079331 | 3R | 17533623..17533829 | 567..773 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 17533260..17533334 | 496..570 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:27 has no hits.
MXO02243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:42 Download gff for
MXO02243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 95..852 | 18..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:24 Download gff for
MXO02243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 698..1452 | 19..773 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:09 Download gff for
MXO02243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 698..1452 | 19..773 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:09 Download gff for
MXO02243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532723..17533199 | 19..495 | 100 | <- | Plus |
| 3R | 17533260..17533330 | 496..566 | 100 | <- | Plus |
| 3R | 17533623..17533829 | 567..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:24 Download gff for
MXO02243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358445..13358921 | 19..495 | 100 | <- | Plus |
| arm_3R | 13358982..13359052 | 496..566 | 100 | <- | Plus |
| arm_3R | 13359345..13359551 | 567..773 | 100 | | Plus |
MXO02243.5prime Sequence
893 bp (751 high quality bases) assembled on 2007-01-19
> MXO02243.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
AAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCTGGAAAAACGCTGGGCGCGTCTTTAAAG
MXO02243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:35:12 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:24:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 19:24:33 has no hits.
Blast to na_te.dros performed on 2014-11-28 19:24:35 has no hits.
MXO02243.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:57:13 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:57:13 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:26 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:26 has no hits.
