MXO02245.3prime Sequence
861 bp (802 high quality bases) assembled on 2007-01-19
> MXO02245.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGCCTGCTCCACCATATCGATGTTGA
CCTTGTAGAACACATAGGGGAAGTATTCGGACTGGCCAAAGCCCAGGCCG
GGGATGTCTACGTTATCAGCACTGCTGACAGCACCGCCGGCGGAGGCGCC
ATCCAAGTGACCATACAGCTGGTTGAGCACATCGCGCAGACGCTTCACGC
TCTTCTTGTTGGGCTCGATCAAGATGGCCTGGAAGTTAACAGGCAGTCCG
TATCTCAGCACGGATTCCACAAACACGCGCAGCGCCTTGACGTGGATGAG
GGCGCAGAAGGCCTCGCTGAAGTTCACCTTCAGCCAACGAACCAAAGGAC
CAAACTGCTTCTTCTTGTCCGTCATCAGCTTGGTCATCTCGTTCTTGCCG
GCAGCCAGCTCTTCCTCGTTGTACACAAAGTCGCGCACAATGAACTTGCG
CTCGCGGGCATGCAGCTTAAACTCCTCGGCAACCTTCTTGAAGAGCGTCA
CGTTGAACAGGCAGTAGTCGGCGTCCTCCTGGATGAGCTGCGACGAGCGG
GGCACGATCATGTCGGTGATCTTCTCGTAGTTGGTCAGCCAGTCATTAGC
CATGACCTTGGGTACAATGACCAGCAGGGTGGTCAGGTACTCCGAGTCCA
GGATGAAGTGCTCCTTCTTGACCAAATCAGCCAGATTCCTGGTCAGCAGA
CTGCCAGTCTTCTTCTTTTCCAGATTCTGCAGATTTCCCTTGAGGTTGTT
ATAGGCCTGCGACTTGGTCTTCAAATCGCCATCGATCTGACCGATCTGCT
TGGAGATAATGTCGGCGATGTTGCGCAGCGACTGCTTGATCGGATACTTG
GCCATGTCCCA
MXO02245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8048-PA | 1167 | Vha44-RA | 322..1164 | 861..19 | 4190 | 99.8 | Minus |
CG8048-PD | 2145 | Vha44-RD | 1300..2142 | 861..19 | 4190 | 99.8 | Minus |
CG8048-PC | 1329 | Vha44-RC | 484..1326 | 861..19 | 4190 | 99.8 | Minus |
CG8048-PB | 1167 | Vha44-RB | 322..1164 | 861..19 | 4190 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RC | 2693 | CG8048-RC | 695..1537 | 861..19 | 4200 | 99.9 | Minus |
Vha44-RB | 1431 | CG8048-RB | 533..1375 | 861..19 | 4200 | 99.9 | Minus |
Vha44-RA | 1470 | CG8048-RA | 478..1320 | 861..19 | 4200 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 351..607 | 1270 | 99.6 | Plus |
2R | 25286936 | 2R | 16326974..16327128 | 707..861 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16326135..16326275 | 115..255 | 705 | 100 | Plus |
2R | 25286936 | 2R | 16326810..16326909 | 607..706 | 500 | 100 | Plus |
2R | 25286936 | 2R | 16326333..16326430 | 254..351 | 490 | 100 | Plus |
2R | 25286936 | 2R | 16325969..16326064 | 19..114 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:47 has no hits.
MXO02245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:44 Download gff for
MXO02245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8048-PB | 323..1167 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:02 Download gff for
MXO02245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 479..1324 | 14..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:33 Download gff for
MXO02245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 479..1324 | 14..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:33 Download gff for
MXO02245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16325965..16326064 | 14..114 | 98 | <- | Plus |
2R | 16326135..16326273 | 115..253 | 100 | <- | Plus |
2R | 16326333..16326430 | 254..351 | 100 | <- | Plus |
2R | 16326493..16326748 | 352..607 | 99 | <- | Plus |
2R | 16326811..16326909 | 608..706 | 100 | <- | Plus |
2R | 16326974..16327127 | 707..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:02 Download gff for
MXO02245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12213470..12213569 | 14..114 | 98 | <- | Plus |
arm_2R | 12213640..12213778 | 115..253 | 100 | <- | Plus |
arm_2R | 12213838..12213935 | 254..351 | 100 | <- | Plus |
arm_2R | 12213998..12214253 | 352..607 | 99 | <- | Plus |
arm_2R | 12214316..12214414 | 608..706 | 100 | <- | Plus |
arm_2R | 12214479..12214632 | 707..860 | 100 | | Plus |
MXO02245.5prime Sequence
654 bp (634 high quality bases) assembled on 2007-01-19
> MXO02245.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAATCCCTGACAGCAAAATGAAAAATAAAGTCCG
ATTC
MXO02245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:35:46 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:05:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 20:05:15 has no hits.
Blast to na_te.dros performed on 2014-11-28 20:05:16 has no hits.
MXO02245.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:50:58 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:50:58 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:23:42 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:23:42 has no hits.