Clone MXO02245 Report

Search the DGRC for MXO02245

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:45
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptVha44-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02245.3prime Sequence

861 bp (802 high quality bases) assembled on 2007-01-19

> MXO02245.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGCCTGCTCCACCATATCGATGTTGA
CCTTGTAGAACACATAGGGGAAGTATTCGGACTGGCCAAAGCCCAGGCCG
GGGATGTCTACGTTATCAGCACTGCTGACAGCACCGCCGGCGGAGGCGCC
ATCCAAGTGACCATACAGCTGGTTGAGCACATCGCGCAGACGCTTCACGC
TCTTCTTGTTGGGCTCGATCAAGATGGCCTGGAAGTTAACAGGCAGTCCG
TATCTCAGCACGGATTCCACAAACACGCGCAGCGCCTTGACGTGGATGAG
GGCGCAGAAGGCCTCGCTGAAGTTCACCTTCAGCCAACGAACCAAAGGAC
CAAACTGCTTCTTCTTGTCCGTCATCAGCTTGGTCATCTCGTTCTTGCCG
GCAGCCAGCTCTTCCTCGTTGTACACAAAGTCGCGCACAATGAACTTGCG
CTCGCGGGCATGCAGCTTAAACTCCTCGGCAACCTTCTTGAAGAGCGTCA
CGTTGAACAGGCAGTAGTCGGCGTCCTCCTGGATGAGCTGCGACGAGCGG
GGCACGATCATGTCGGTGATCTTCTCGTAGTTGGTCAGCCAGTCATTAGC
CATGACCTTGGGTACAATGACCAGCAGGGTGGTCAGGTACTCCGAGTCCA
GGATGAAGTGCTCCTTCTTGACCAAATCAGCCAGATTCCTGGTCAGCAGA
CTGCCAGTCTTCTTCTTTTCCAGATTCTGCAGATTTCCCTTGAGGTTGTT
ATAGGCCTGCGACTTGGTCTTCAAATCGCCATCGATCTGACCGATCTGCT
TGGAGATAATGTCGGCGATGTTGCGCAGCGACTGCTTGATCGGATACTTG
GCCATGTCCCA

MXO02245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8048-PA 1167 Vha44-RA 322..1164 861..19 4190 99.8 Minus
CG8048-PD 2145 Vha44-RD 1300..2142 861..19 4190 99.8 Minus
CG8048-PC 1329 Vha44-RC 484..1326 861..19 4190 99.8 Minus
CG8048-PB 1167 Vha44-RB 322..1164 861..19 4190 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RC 2693 CG8048-RC 695..1537 861..19 4200 99.9 Minus
Vha44-RB 1431 CG8048-RB 533..1375 861..19 4200 99.9 Minus
Vha44-RA 1470 CG8048-RA 478..1320 861..19 4200 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 351..607 1270 99.6 Plus
2R 25286936 2R 16326974..16327128 707..861 775 100 Plus
2R 25286936 2R 16326135..16326275 115..255 705 100 Plus
2R 25286936 2R 16326810..16326909 607..706 500 100 Plus
2R 25286936 2R 16326333..16326430 254..351 490 100 Plus
2R 25286936 2R 16325969..16326064 19..114 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:21:47 has no hits.

MXO02245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:44 Download gff for MXO02245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8048-PB 323..1167 15..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:02 Download gff for MXO02245.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 479..1324 14..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:33 Download gff for MXO02245.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 479..1324 14..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:33 Download gff for MXO02245.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16325965..16326064 14..114 98 <- Plus
2R 16326135..16326273 115..253 100 <- Plus
2R 16326333..16326430 254..351 100 <- Plus
2R 16326493..16326748 352..607 99 <- Plus
2R 16326811..16326909 608..706 100 <- Plus
2R 16326974..16327127 707..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:02 Download gff for MXO02245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12213470..12213569 14..114 98 <- Plus
arm_2R 12213640..12213778 115..253 100 <- Plus
arm_2R 12213838..12213935 254..351 100 <- Plus
arm_2R 12213998..12214253 352..607 99 <- Plus
arm_2R 12214316..12214414 608..706 100 <- Plus
arm_2R 12214479..12214632 707..860 100   Plus

MXO02245.5prime Sequence

654 bp (634 high quality bases) assembled on 2007-01-19

> MXO02245.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAATCCCTGACAGCAAAATGAAAAATAAAGTCCG
ATTC

MXO02245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:35:46 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:05:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 20:05:15 has no hits.
Blast to na_te.dros performed on 2014-11-28 20:05:16 has no hits.

MXO02245.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:50:58 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:50:58 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:23:42 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:23:42 has no hits.