MXO02246.3prime Sequence
866 bp (741 high quality bases) assembled on 2007-01-19
> MXO02246.3prime
ATGGTCTAGAAAGCTTGCCAATCCGGCAACAATTATTGCTGGGTTCTCAA
CGGCAGCCTTTATTTTTCGCAGGAACAGGACCGCCTCACGTCCATCAATG
ATTCGGTGATCGTAGGTCAGGGCGATGTACATCATAGGACGTATCTTGAC
CTCTCCCTTGACAGCAATTGGCCGCTCAAAGATGCCGTGCATGCCGAGAA
TGGCACTCTGTGGCGGATTGATGATGGGCGTGCCCATCAGGGATCCGAAC
ACTCCGCCATTGCTGATGGTGAAGGTGCCACCGTCCATGTCTTCCACGGT
GATGGCATCCCGCCTGGCCTTATCGGCCAGACCGGCCAGTGCGATCTCGA
TGTCCGCATAGTTCATGCCCTCCACGTTGCGGATGACGGGTACCATTAAT
CCTCGGGGCGTAGCCACGGCCACAGAGATGTCAACGTAGTCGCGATACAC
GATGTCCGTGCCATCGATGACGGCGTTCACTACGGGCTGATCCTGCAGCG
CATAGGCACTAGCCTTGGCGAAGATCGACATGAATCCAAACTTAATACCA
TACTTCTTAGTGAACGCATCCAGATTCTGCTTTCGGAAGTCCATGGCATA
GCTCATATCAACCTCGTTGAAAGTGGTGAGCATGGCACATGTGTTCTGGG
CATCCTTCAAGCGGGCGGCAATCTTTAGACGCATGCGGTTCATCTTGACA
CGCTGCTCGGACCTAGTGCCTAGGATCTGCCGCGATCCGTCCGCTGGTGG
CACCTTCACCTGGGCGACGGCCGGTTTGAGTGCAGCCACTGGAGCAGGTG
GCGGTGGTCGAGGGGCTGCCTTTGGTGGTGGCGGTGGTGGTGGCTTTGGT
GCGCCGGCGCAGGTGG
MXO02246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5214-PA | 1407 | CG5214-RA | 556..1404 | 866..19 | 4055 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5214-RA | 1817 | CG5214-RA | 696..1544 | 866..19 | 4130 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11246087..11246395 | 457..149 | 1470 | 98.4 | Minus |
| 3R | 32079331 | 3R | 11245404..11245660 | 858..602 | 1285 | 100 | Minus |
| 3R | 32079331 | 3R | 11245737..11245884 | 603..456 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11246456..11246589 | 152..19 | 655 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:53 has no hits.
MXO02246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:45 Download gff for
MXO02246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-PA | 556..1407 | 15..866 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:04 Download gff for
MXO02246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 696..1547 | 15..866 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:36 Download gff for
MXO02246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 696..1547 | 15..866 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:36 Download gff for
MXO02246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11245395..11245660 | 602..866 | 99 | -> | Minus |
| 3R | 11245739..11245883 | 457..601 | 100 | -> | Minus |
| 3R | 11246088..11246393 | 151..456 | 98 | -> | Minus |
| 3R | 11246458..11246593 | 15..150 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:04 Download gff for
MXO02246.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7072180..7072315 | 15..150 | 97 | -> | Minus |
| arm_3R | 7071117..7071382 | 602..866 | 99 | -> | Minus |
| arm_3R | 7071461..7071605 | 457..601 | 100 | -> | Minus |
| arm_3R | 7071810..7072115 | 151..456 | 98 | -> | Minus |
MXO02246.5prime Sequence
845 bp (676 high quality bases) assembled on 2007-01-19
> MXO02246.5prime
CAGTCGACATGACGGGAATAATTTCGATCGTAACGAGACGGCTGCCCCAA
ACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGCTGCATCCG
CCAATATTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCAACTGCTTC
GCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTCTCACCTGG
CAGGGAATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACCGTCAATGT
GCCACCCTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTTTACTTGCA
AGGTGGGTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAATCGAGACC
GACAAGACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACTCTGACCGA
CATTCTGGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGCTCTGTTCA
AGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAGCGGCTGCT
CCTGCGCCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCTGCACCCAA
GCCGGCACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACCACCACCGC
CACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAGTGGCTGCA
CTCAAACCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGACGGATCGCG
GCAGATCCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAACCGCATGC
GTCTAAAGATTGCCGCCCGCTTGAAGGATGCCCAGAACACATGTGCCATG
CTCACCACTTTCAACGAGGTTGATATGAGCTATGCCTGGGACTTC
MXO02246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5214-PA | 1407 | CG5214-RA | 1..828 | 9..836 | 4090 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5214-RA | 1817 | CG5214-RA | 141..977 | 9..845 | 4125 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11245121..11245660 | 290..829 | 2670 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11244785..11244891 | 82..188 | 535 | 100 | Plus |
| 3R | 32079331 | 3R | 11244943..11245048 | 186..291 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 11244442..11244521 | 9..88 | 400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2658 | 486..547 | 112 | 64.5 | Plus |
MXO02246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:45 Download gff for
MXO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-PA | 1..837 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:36 Download gff for
MXO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 136..977 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:54 Download gff for
MXO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 136..977 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:54 Download gff for
MXO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11244437..11244516 | 1..83 | 96 | -> | Plus |
| 3R | 11244787..11244890 | 84..187 | 100 | -> | Plus |
| 3R | 11244945..11245046 | 188..289 | 100 | -> | Plus |
| 3R | 11245121..11245671 | 290..838 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:36 Download gff for
MXO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7070159..7070238 | 1..83 | 96 | -> | Plus |
| arm_3R | 7070509..7070612 | 84..187 | 100 | -> | Plus |
| arm_3R | 7070667..7070768 | 188..289 | 100 | -> | Plus |
| arm_3R | 7070843..7071393 | 290..838 | 98 | | Plus |
