MXO02248.3prime Sequence
774 bp (692 high quality bases) assembled on 2007-01-19
> MXO02248.3prime
ATGGTCTAGAAAGCTTGCAGATATAGTACAGTCGCAGCACATCAGTGAGT
AGTACAAGCATTTAACGACTTTCTCATCGTTGTCATCGTACTCCTTGCGA
TTCAATTTGGCCTTGTCATTGTCATAGCCTAACGATTTGGCATCCAACTG
GTCGGCGGCCAGGCCCTCCACCTTTTTGGACATCTTTCGCTTATTCGCAT
GTATCAGTTCGTTGGTGTTTCGCTGTCCCACCATTTCGTCGATCCAATCG
AAGTCTGTGGCGTTTCCCTGAAACCTGGTTAAACTGGAAATGGTTTCGAT
CGAATTGATATCCTCCTGATTGTTGTTGTGGTTCTTATATCTACTTTTCT
GTGGCGTTGTTTGCTGGGAATGTGATGCGGGCGGCGACGAGCCCGGCTTA
TGATTAGCCAGTGGCGAAGAATCGGTTGCTATCGATGCTGTGGTTCCCGC
AGAGCTATTTAGCACCACATCGGTGTCCTGTGCTGCTGGAAAACTTGGCA
CCTTCGGCAAATCCTCGGGGCTTACAAAGTTGTGCAAGTCCTGTATTACA
ACGGTGGTGATCACGCTGGGCGAAGTCATGGCTCGCGTGGATGCGGTTGC
AGTCTCGGAAGTAGGACTATACGGGATCGGTGAGTTCGGGCTCACAGGCG
TAGTCGGCAGTGTGGCAGTCTCCGAAACGATGGCCAAGTCCTCAGAGGAT
GCTCTATCGCTGTTTGCGCATCCTTGAACCAGCGAACAGGTGGCCACAAT
GCTCAGCGACGATGATGGTGAGTT
MXO02248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-PA | 969 | CG9992-RA | 211..966 | 774..19 | 3780 | 100 | Minus |
CG9992-PD | 969 | CG9992-RD | 211..966 | 774..19 | 3780 | 100 | Minus |
CG9992-PE | 969 | CG9992-RE | 211..966 | 774..19 | 3780 | 100 | Minus |
CG9992-PC | 969 | CG9992-RC | 211..966 | 774..19 | 3780 | 100 | Minus |
CG9992-PB | 564 | CG9992-RB | 1..561 | 579..19 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-RC | 1340 | CG9992-RC | 278..1033 | 774..19 | 3780 | 100 | Minus |
CG9992-RE | 1380 | CG9992-RE | 318..1073 | 774..19 | 3780 | 100 | Minus |
CG9992-RD | 1608 | CG9992-RD | 546..1301 | 774..19 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16382261..16382565 | 19..323 | 1510 | 99.7 | Plus |
X | 23542271 | X | 16382906..16383145 | 535..774 | 1200 | 100 | Plus |
X | 23542271 | X | 16382624..16382844 | 315..535 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:39 has no hits.
MXO02248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:47 Download gff for
MXO02248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-PC | 211..969 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:18 Download gff for
MXO02248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 546..1304 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:08 Download gff for
MXO02248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 546..1304 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:08 Download gff for
MXO02248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16382906..16383145 | 535..774 | 100 | | Plus |
X | 16382257..16382557 | 15..315 | 99 | <- | Plus |
X | 16382625..16382843 | 316..534 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:18 Download gff for
MXO02248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16276290..16276590 | 15..315 | 99 | <- | Plus |
arm_X | 16276658..16276876 | 316..534 | 100 | <- | Plus |
arm_X | 16276939..16277178 | 535..774 | 100 | | Plus |
MXO02248.5prime Sequence
877 bp (770 high quality bases) assembled on 2007-01-19
> MXO02248.5prime
CAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGAGCGGTATG
CGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGTCGTTTTAA
TGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAAGAGCGAAG
TATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTGATTTTCCC
TCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGCATTGTGGC
CACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGCATCCTCTG
AGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTACGCCTGTG
AGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACTGCAACCGC
ATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGTTGTAATAC
AGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGGTGCCAAGT
TTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCTGCGGGAAC
CACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCATAAGCCGG
GCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCACAGAAAAGT
AGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCGATCGAAAC
CATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTTCGATTGGA
TCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATACATGCGAAT
AAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGACCAGTTGGA
TGCCAAATCGTTAGGCTATGACAATGA
MXO02248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-PA | 969 | CG9992-RA | 1..869 | 9..877 | 4345 | 100 | Plus |
CG9992-PD | 969 | CG9992-RD | 1..869 | 9..877 | 4345 | 100 | Plus |
CG9992-PE | 969 | CG9992-RE | 1..869 | 9..877 | 4345 | 100 | Plus |
CG9992-PC | 969 | CG9992-RC | 1..869 | 9..877 | 4345 | 100 | Plus |
CG9992-PB | 564 | CG9992-RB | 1..464 | 414..877 | 2320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9992-RC | 1340 | CG9992-RC | 68..936 | 9..877 | 4345 | 100 | Plus |
CG9992-RE | 1380 | CG9992-RE | 108..976 | 9..877 | 4345 | 100 | Plus |
CG9992-RD | 1608 | CG9992-RD | 336..1204 | 9..877 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16382906..16383167 | 458..197 | 1310 | 100 | Minus |
X | 23542271 | X | 16382624..16382844 | 678..458 | 1105 | 100 | Minus |
X | 23542271 | X | 16382358..16382565 | 877..670 | 1025 | 99.5 | Minus |
X | 23542271 | X | 16383324..16383511 | 196..9 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:23 has no hits.
MXO02248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:47 Download gff for
MXO02248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-PC | 1..868 | 9..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:42 Download gff for
MXO02248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 332..1203 | 4..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:00 Download gff for
MXO02248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9992-RD | 332..1203 | 4..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:00 Download gff for
MXO02248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16382359..16382557 | 678..876 | 100 | <- | Minus |
X | 16382625..16382843 | 459..677 | 100 | <- | Minus |
X | 16382906..16383167 | 197..458 | 100 | <- | Minus |
X | 16383324..16383515 | 4..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:42 Download gff for
MXO02248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16276392..16276590 | 678..876 | 100 | <- | Minus |
arm_X | 16276658..16276876 | 459..677 | 100 | <- | Minus |
arm_X | 16276939..16277200 | 197..458 | 100 | <- | Minus |
arm_X | 16277357..16277548 | 4..196 | 98 | | Minus |