Clone MXO02248 Report

Search the DGRC for MXO02248

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:48
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9992-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02248.3prime Sequence

774 bp (692 high quality bases) assembled on 2007-01-19

> MXO02248.3prime
ATGGTCTAGAAAGCTTGCAGATATAGTACAGTCGCAGCACATCAGTGAGT
AGTACAAGCATTTAACGACTTTCTCATCGTTGTCATCGTACTCCTTGCGA
TTCAATTTGGCCTTGTCATTGTCATAGCCTAACGATTTGGCATCCAACTG
GTCGGCGGCCAGGCCCTCCACCTTTTTGGACATCTTTCGCTTATTCGCAT
GTATCAGTTCGTTGGTGTTTCGCTGTCCCACCATTTCGTCGATCCAATCG
AAGTCTGTGGCGTTTCCCTGAAACCTGGTTAAACTGGAAATGGTTTCGAT
CGAATTGATATCCTCCTGATTGTTGTTGTGGTTCTTATATCTACTTTTCT
GTGGCGTTGTTTGCTGGGAATGTGATGCGGGCGGCGACGAGCCCGGCTTA
TGATTAGCCAGTGGCGAAGAATCGGTTGCTATCGATGCTGTGGTTCCCGC
AGAGCTATTTAGCACCACATCGGTGTCCTGTGCTGCTGGAAAACTTGGCA
CCTTCGGCAAATCCTCGGGGCTTACAAAGTTGTGCAAGTCCTGTATTACA
ACGGTGGTGATCACGCTGGGCGAAGTCATGGCTCGCGTGGATGCGGTTGC
AGTCTCGGAAGTAGGACTATACGGGATCGGTGAGTTCGGGCTCACAGGCG
TAGTCGGCAGTGTGGCAGTCTCCGAAACGATGGCCAAGTCCTCAGAGGAT
GCTCTATCGCTGTTTGCGCATCCTTGAACCAGCGAACAGGTGGCCACAAT
GCTCAGCGACGATGATGGTGAGTT

MXO02248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PA 969 CG9992-RA 211..966 774..19 3780 100 Minus
CG9992-PD 969 CG9992-RD 211..966 774..19 3780 100 Minus
CG9992-PE 969 CG9992-RE 211..966 774..19 3780 100 Minus
CG9992-PC 969 CG9992-RC 211..966 774..19 3780 100 Minus
CG9992-PB 564 CG9992-RB 1..561 579..19 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RC 1340 CG9992-RC 278..1033 774..19 3780 100 Minus
CG9992-RE 1380 CG9992-RE 318..1073 774..19 3780 100 Minus
CG9992-RD 1608 CG9992-RD 546..1301 774..19 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16382261..16382565 19..323 1510 99.7 Plus
X 23542271 X 16382906..16383145 535..774 1200 100 Plus
X 23542271 X 16382624..16382844 315..535 1105 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:45:39 has no hits.

MXO02248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:47 Download gff for MXO02248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-PC 211..969 15..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:18 Download gff for MXO02248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 546..1304 15..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:08 Download gff for MXO02248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 546..1304 15..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:08 Download gff for MXO02248.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16382906..16383145 535..774 100   Plus
X 16382257..16382557 15..315 99 <- Plus
X 16382625..16382843 316..534 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:18 Download gff for MXO02248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16276290..16276590 15..315 99 <- Plus
arm_X 16276658..16276876 316..534 100 <- Plus
arm_X 16276939..16277178 535..774 100   Plus

MXO02248.5prime Sequence

877 bp (770 high quality bases) assembled on 2007-01-19

> MXO02248.5prime
CAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGAGCGGTATG
CGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGTCGTTTTAA
TGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAAGAGCGAAG
TATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTGATTTTCCC
TCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGCATTGTGGC
CACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGCATCCTCTG
AGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTACGCCTGTG
AGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACTGCAACCGC
ATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGTTGTAATAC
AGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGGTGCCAAGT
TTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCTGCGGGAAC
CACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCATAAGCCGG
GCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCACAGAAAAGT
AGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCGATCGAAAC
CATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTTCGATTGGA
TCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATACATGCGAAT
AAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGACCAGTTGGA
TGCCAAATCGTTAGGCTATGACAATGA

MXO02248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PA 969 CG9992-RA 1..869 9..877 4345 100 Plus
CG9992-PD 969 CG9992-RD 1..869 9..877 4345 100 Plus
CG9992-PE 969 CG9992-RE 1..869 9..877 4345 100 Plus
CG9992-PC 969 CG9992-RC 1..869 9..877 4345 100 Plus
CG9992-PB 564 CG9992-RB 1..464 414..877 2320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RC 1340 CG9992-RC 68..936 9..877 4345 100 Plus
CG9992-RE 1380 CG9992-RE 108..976 9..877 4345 100 Plus
CG9992-RD 1608 CG9992-RD 336..1204 9..877 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16382906..16383167 458..197 1310 100 Minus
X 23542271 X 16382624..16382844 678..458 1105 100 Minus
X 23542271 X 16382358..16382565 877..670 1025 99.5 Minus
X 23542271 X 16383324..16383511 196..9 940 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:05:23 has no hits.

MXO02248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:47 Download gff for MXO02248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-PC 1..868 9..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:42 Download gff for MXO02248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 332..1203 4..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:00 Download gff for MXO02248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 332..1203 4..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:00 Download gff for MXO02248.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16382359..16382557 678..876 100 <- Minus
X 16382625..16382843 459..677 100 <- Minus
X 16382906..16383167 197..458 100 <- Minus
X 16383324..16383515 4..196 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:42 Download gff for MXO02248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16276392..16276590 678..876 100 <- Minus
arm_X 16276658..16276876 459..677 100 <- Minus
arm_X 16276939..16277200 197..458 100 <- Minus
arm_X 16277357..16277548 4..196 98   Minus