MXO02251.3prime Sequence
462 bp (450 high quality bases) assembled on 2007-01-19
> MXO02251.3prime
ATGGTCTAGAAAGCTTGCGTTCCCGGCCAGTCGCACAAGCAGCTTCCGCC
GATCCTCATCGATGGTGGTCAGGAAATTCTGGACGCGTTCGCTGTAGAAG
TCAGTCGCCTTGGCCAGCTGGCAGCTCTGCATCCTCTCCGCTCGCCGAAA
GTCGTCCAGCTGCCAGCGATCACGCTGGTAGGCCAGAATGCTGGCCAGGA
AATGCCAGAAAGTGATCTGCGGCCACAGGACGTTGCTGAAGTACAACACG
GATGTGCTTAACTGCCACATCATGAAGTCGCTTAGCCTAGTCTCGCCGGA
GGTGCGGAACACCAGATCCGGTGGCGGCGAGTGTCGCGTGTAGAGGCATT
CTTCCAGCGGGGGCACACTGAAGTCCTCGTCCTCCACCCCCCGCCTGCCA
TGCCGCACTCTCCTTTCCAAAGCAAGAGTGATCTCATCCCGCGACGTGTA
CGCAAGGGCGAC
MXO02251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10778-PA | 903 | CG10778-RA | 561..895 | 358..24 | 1675 | 100 | Minus |
| CG10778-PA | 903 | CG10778-RA | 457..488 | 462..431 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10778-RB | 1251 | CG10778-RB | 501..939 | 462..24 | 1850 | 94.8 | Minus |
| CG10778-RA | 1346 | CG10778-RA | 596..1034 | 462..24 | 1850 | 94.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7932057..7932297 | 24..264 | 1205 | 100 | Plus |
| X | 23542271 | X | 7932537..7932737 | 262..462 | 660 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:42 has no hits.
MXO02251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:48 Download gff for
MXO02251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10778-PA | 457..903 | 15..462 | 93 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:26 Download gff for
MXO02251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10778-RA | 596..1043 | 14..462 | 93 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:15 Download gff for
MXO02251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10778-RA | 596..1043 | 14..462 | 93 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:15 Download gff for
MXO02251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7932048..7932294 | 14..261 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:26 Download gff for
MXO02251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7826081..7826327 | 14..261 | 98 | <- | Plus |
MXO02251.5prime Sequence
547 bp (515 high quality bases) assembled on 2007-01-19
> MXO02251.5prime
CAGTCGACATGTCGTGGGTCTCCGACTACAAGTACACATGGACGGAGCGG
ATAGCGATGCGAACGCTGCGCGCCTGTGGCTACATTCCGCACCACGTCGC
CTTCGTGATGGACGGTAATCGGAGGTTCGCCCGCTCACAGCAGATTGATA
AGATCGAGGGTCATTCGCGGGGATTCGAGAAGCTTGCGGACTGCCTGCGC
TGGTGCCTGGACGTTGGCGTCCGCGAGGTGACCACCTTTGCCTTCAGCAT
CGAGAACTTCAAGCGTTCCAACGAGGAGGTGGAGGGTCTGTTCAATTTGG
CCAGAGAGAAGTTTGCCCGCCTGCTGGAGGAGACTGCTCGACTGGACGAA
CATGGCATCCGCATTCGGGTGATTGGTAACATCGAGCTACTGCCCCCCGA
CTTGCAGAAACTAGTGGCTTCGGCTATGCTTAGCACGGAGCGCAATGACA
AGCTCTTCCTGAACGTCGCCTTTGCGTACACGTCGCGGGATGAGATTACG
CAGGCGGTGGAAACGATACCGCGGCATGGCCACCCAGATTTGGGCGG
MXO02251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10778-PA | 903 | CG10778-RA | 1..522 | 9..530 | 2535 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10778-RB | 1251 | CG10778-RB | 44..579 | 8..543 | 2575 | 98.9 | Plus |
| CG10778-RA | 1346 | CG10778-RA | 139..674 | 8..543 | 2575 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7932659..7933194 | 543..8 | 2575 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:07 has no hits.
MXO02251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:48 Download gff for
MXO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10778-PA | 1..538 | 9..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:24 Download gff for
MXO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10778-RA | 132..677 | 1..547 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:03 Download gff for
MXO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10778-RA | 132..677 | 1..547 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:03 Download gff for
MXO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7932656..7933198 | 1..547 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:24 Download gff for
MXO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7826689..7827231 | 1..547 | 97 | | Minus |
