Clone MXO02253 Report

Search the DGRC for MXO02253

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:53
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5114-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02253.3prime Sequence

528 bp (373 high quality bases) assembled on 2007-01-19

> MXO02253.3prime
ATGGTCTAGAAAGCTTGCATCCCCCAGCGCCGGCACCTTGAATATCTTGG
CCGTGTTGTCCTCGGATACCGTTAGCAATAGATTTTCCTGAGGCTTGTAG
ACAAACTCGTAGATGTGATAGTAGTGTCCCGTCAGAGTGAATTTCAGAAT
TCCTGTGCGTGCGTCGAATGCGTTCAGATTTCCCTGCGAGGTGGCCGCAA
GTATCGTGTGGTCGTTCAACCATTTGATCCTTATGACAGCATCATTGGGA
ACTGGATTTTCGCATATGGTACGCAACGCTGATTTGGCATAGTCCCAGAT
GGATATCCTGCCGTCCAGCGAGCCACAGGCAAAGAGCTTTAGATCCGCCG
AGGAGGGAGCAAAGGCCAGACACTCAATACCCCCCCCCCACTGGATTGTG
CTAACCCTACCGAAAAAAAAGCAGAACAGCATTTTTCCGGACGCCTCAAC
GCAGACGTAGAAGGGCGATTCCCTTTAGCAGGCCACGACCGCGTGCGTGA
ATCTCCCCGAAACCCATTGAATGCGATT

MXO02253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-PA 1278 CG5114-RA 916..1271 378..23 1755 99.7 Minus
CG5114-PA 1278 CG5114-RA 767..873 528..421 375 94.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-RA 1440 CG5114-RA 867..1375 528..19 2180 95.3 Minus
CG5114-RB 1500 CG5114-RB 1017..1435 437..19 1825 95.7 Minus
CG5114-RB 1500 CG5114-RB 867..957 528..437 360 93.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14984209..14984421 231..19 1035 99.1 Minus
3L 28110227 3L 14983912..14984121 438..229 810 92.4 Minus
3L 28110227 3L 14983701..14983791 528..437 335 93.5 Minus
Blast to na_te.dros performed on 2014-11-28 19:24:50 has no hits.

MXO02253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:49 Download gff for MXO02253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-PA 767..1278 18..528 94   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for MXO02253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 867..1380 11..528 94   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:18 Download gff for MXO02253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 867..1380 11..528 94   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:18 Download gff for MXO02253.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14983701..14983790 438..528 93 -> Minus
3L 14983913..14984120 230..437 92 -> Minus
3L 14984211..14984426 11..229 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for MXO02253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14976801..14976890 438..528 93 -> Minus
arm_3L 14977013..14977220 230..437 92 -> Minus
arm_3L 14977311..14977526 11..229 97   Minus

MXO02253.5prime Sequence

679 bp (649 high quality bases) assembled on 2007-01-19

> MXO02253.5prime
CAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATTTCGATGAC
GGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAGCCGCTGGA
CGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACTGGAGGCCC
GGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACGAGGAGGAG
CTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCTACGGTCAC
TTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCATCCCAACT
ACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCGTTTGGGAA
ACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAGGACACCGT
CACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCACCGGTGATC
TAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACGACGAACGT
CCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATGTCCTGGCT
CTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGACAGCGGAG
AGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCCTGCCGGGA
CATTCTTCGCGTTGCGAGTCCGGAGAGCT

MXO02253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-PA 1278 CG5114-RA 1..671 9..679 3305 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-RB 1500 CG5114-RB 101..771 9..679 3325 99.7 Plus
CG5114-RA 1440 CG5114-RA 101..771 9..679 3325 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14982935..14983605 9..679 3325 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:30 has no hits.

MXO02253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:49 Download gff for MXO02253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-PA 1..671 9..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:45 Download gff for MXO02253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 96..771 1..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:04 Download gff for MXO02253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 96..771 1..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:04 Download gff for MXO02253.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14982930..14983605 1..679 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:45 Download gff for MXO02253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14976030..14976705 1..679 99   Plus