MXO02253.3prime Sequence
528 bp (373 high quality bases) assembled on 2007-01-19
> MXO02253.3prime
ATGGTCTAGAAAGCTTGCATCCCCCAGCGCCGGCACCTTGAATATCTTGG
CCGTGTTGTCCTCGGATACCGTTAGCAATAGATTTTCCTGAGGCTTGTAG
ACAAACTCGTAGATGTGATAGTAGTGTCCCGTCAGAGTGAATTTCAGAAT
TCCTGTGCGTGCGTCGAATGCGTTCAGATTTCCCTGCGAGGTGGCCGCAA
GTATCGTGTGGTCGTTCAACCATTTGATCCTTATGACAGCATCATTGGGA
ACTGGATTTTCGCATATGGTACGCAACGCTGATTTGGCATAGTCCCAGAT
GGATATCCTGCCGTCCAGCGAGCCACAGGCAAAGAGCTTTAGATCCGCCG
AGGAGGGAGCAAAGGCCAGACACTCAATACCCCCCCCCCACTGGATTGTG
CTAACCCTACCGAAAAAAAAGCAGAACAGCATTTTTCCGGACGCCTCAAC
GCAGACGTAGAAGGGCGATTCCCTTTAGCAGGCCACGACCGCGTGCGTGA
ATCTCCCCGAAACCCATTGAATGCGATT
MXO02253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 1278 | CG5114-RA | 916..1271 | 378..23 | 1755 | 99.7 | Minus |
CG5114-PA | 1278 | CG5114-RA | 767..873 | 528..421 | 375 | 94.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 867..1375 | 528..19 | 2180 | 95.3 | Minus |
CG5114-RB | 1500 | CG5114-RB | 1017..1435 | 437..19 | 1825 | 95.7 | Minus |
CG5114-RB | 1500 | CG5114-RB | 867..957 | 528..437 | 360 | 93.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14984209..14984421 | 231..19 | 1035 | 99.1 | Minus |
3L | 28110227 | 3L | 14983912..14984121 | 438..229 | 810 | 92.4 | Minus |
3L | 28110227 | 3L | 14983701..14983791 | 528..437 | 335 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:50 has no hits.
MXO02253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:49 Download gff for
MXO02253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 767..1278 | 18..528 | 94 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for
MXO02253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 867..1380 | 11..528 | 94 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:18 Download gff for
MXO02253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 867..1380 | 11..528 | 94 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:18 Download gff for
MXO02253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14983701..14983790 | 438..528 | 93 | -> | Minus |
3L | 14983913..14984120 | 230..437 | 92 | -> | Minus |
3L | 14984211..14984426 | 11..229 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for
MXO02253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976801..14976890 | 438..528 | 93 | -> | Minus |
arm_3L | 14977013..14977220 | 230..437 | 92 | -> | Minus |
arm_3L | 14977311..14977526 | 11..229 | 97 | | Minus |
MXO02253.5prime Sequence
679 bp (649 high quality bases) assembled on 2007-01-19
> MXO02253.5prime
CAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATTTCGATGAC
GGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAGCCGCTGGA
CGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACTGGAGGCCC
GGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACGAGGAGGAG
CTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCTACGGTCAC
TTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCATCCCAACT
ACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCGTTTGGGAA
ACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAGGACACCGT
CACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCACCGGTGATC
TAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACGACGAACGT
CCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATGTCCTGGCT
CTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGACAGCGGAG
AGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCCTGCCGGGA
CATTCTTCGCGTTGCGAGTCCGGAGAGCT
MXO02253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 1278 | CG5114-RA | 1..671 | 9..679 | 3305 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RB | 1500 | CG5114-RB | 101..771 | 9..679 | 3325 | 99.7 | Plus |
CG5114-RA | 1440 | CG5114-RA | 101..771 | 9..679 | 3325 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14982935..14983605 | 9..679 | 3325 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:30 has no hits.
MXO02253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:49 Download gff for
MXO02253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 1..671 | 9..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:45 Download gff for
MXO02253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 96..771 | 1..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:04 Download gff for
MXO02253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 96..771 | 1..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:04 Download gff for
MXO02253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14982930..14983605 | 1..679 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:45 Download gff for
MXO02253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976030..14976705 | 1..679 | 99 | | Plus |