Clone MXO02256 Report

Search the DGRC for MXO02256

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:56
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptkappaB-Ras-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02256.3prime Sequence

530 bp (527 high quality bases) assembled on 2007-01-19

> MXO02256.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGCTCTTCTGCCGGTTCTGCATAACTT
GGCGCAGCTGAGGGAACGTGCTCTTCGTCTGCATTGGGTGCAGCCGGGCG
CAGAGCGTGGTGAATGGCTCGTAGAGGGAGGGACGCTCCATGGCGTTCAC
CGTGTAGTGCTTTATGCGCTCTCGCTGGCACCAGATGTTGGCGCGGTCCA
TGACCTTCTCGACGGGATTTGGGGCTGCTCGTGCCCTCACGTTGGCCAGC
ACCACAACGGGAATCTCCTTCTTCTCCTTGTGCTTCTCAATGTCAGCCTT
GATGTCGGCCAGCATGTCAAGGCTGCGCGGATCCATGGGATCGTAGACCA
GAACGAATGCATCTGGAAACTGAAGGTAGTGGCGTGGCAGCTGCTGCTGC
TCGCCCTGCAATCCGGCCGAGTCGTAGATGCGCAGGGTCTCTCGGGCTCC
GCCCCTGCCTGTATCCACGCTGGCCACGTAGATATCCTCAATGGTTGGAT
GCAGTTCCGTTTCGAGATTGACGTGGCCGT

MXO02256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1669-PA 606 kappaB-Ras-RA 92..603 530..19 2510 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 189..700 530..19 2530 99.6 Minus
kappaB-Ras-RB 1842 CG1669-RB 189..700 530..19 2530 99.6 Minus
kappaB-Ras-RC 933 CG1669-RC 189..700 530..19 2530 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445029..7445518 19..508 2435 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:20:27 has no hits.

MXO02256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:51 Download gff for MXO02256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 92..606 18..530 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:57 Download gff for MXO02256.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 189..705 12..530 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:39 Download gff for MXO02256.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 189..705 12..530 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:39 Download gff for MXO02256.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7445026..7445517 19..507 99 <- Plus
2R 7445582..7445604 508..530 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:57 Download gff for MXO02256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332531..3333022 19..507 99 <- Plus
arm_2R 3333087..3333109 508..530 95   Plus

MXO02256.5prime Sequence

627 bp (627 high quality bases) assembled on 2007-01-19

> MXO02256.5prime
CAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGGTACTGGTG
TGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAGCTGGTCTA
CGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGAGGATATCT
ACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGACCCTGCGC
ATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTGCCACGCCA
CTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCCCATGGATC
CGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTGAGAAGCAC
AAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTGAGGGCACG
AGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAACATCTGGT
GCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGGAGCGTCCC
TCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCACCCAATGCA
GACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAACCGGCAGA
AGAGCGAGGCTGCAAGCTTTCTAGACC

MXO02256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1669-PA 606 kappaB-Ras-RA 1..603 9..611 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..700 9..611 3015 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 98..700 9..611 3015 100 Plus
kappaB-Ras-RC 933 CG1669-RC 98..700 9..611 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445029..7445518 611..122 2450 100 Minus
2R 25286936 2R 7445581..7445695 123..9 575 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:15:59 has no hits.

MXO02256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:51 Download gff for MXO02256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 9..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:11 Download gff for MXO02256.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..705 9..618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:43 Download gff for MXO02256.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..705 9..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:43 Download gff for MXO02256.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7445026..7445517 123..611 99 <- Minus
2R 7445582..7445695 9..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:11 Download gff for MXO02256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332531..3333022 123..611 99 <- Minus
arm_2R 3333087..3333200 9..122 100   Minus