Clone MXO02258 Report

Search the DGRC for MXO02258

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:58
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptmael-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02258.5prime Sequence

522 bp (521 high quality bases) assembled on 2007-01-19

> MXO02258.5prime
CAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGTTCGTAAAC
GAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTGGCGCAGGC
TGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCAGCAGCGTG
GTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAACGCGCCAAA
AGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAAAGGGAGGC
CACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCTCGTGCTAA
ACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCTTCGTTGCC
TTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTGCCCGCCGA
GTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATCCATCTACA
GCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTAGCGATGCC
CTGCTTCCTCTTCACCACTCAC

MXO02258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11254-PA 1380 mael-RA 1..516 9..522 2500 99.6 Plus
CG11254-PB 1380 mael-RB 1..516 9..522 2500 99.6 Plus
CG11254-PC 1389 mael-RC 128..525 127..522 1910 99.4 Plus
CG11254-PC 1389 mael-RC 1..120 9..128 600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
mael-RD 2143 CG11254-RD 647..1162 9..522 2530 99.6 Plus
mael-RB 1830 CG11254-RB 334..849 9..522 2530 99.6 Plus
mael-RA 1759 CG11254-RA 263..778 9..522 2530 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22724738..22724929 127..318 960 100 Plus
3L 28110227 3L 22724985..22725174 318..507 950 100 Plus
3L 28110227 3L 22724566..22724685 9..128 600 100 Plus
Blast to na_te.dros performed 2014-11-28 18:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 379..406 522..495 113 89.3 Minus
invader1 4032 invader1 INVADER 4032bp 3988..4015 522..495 113 89.3 Minus

MXO02258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:52 Download gff for MXO02258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11254-PB 1..516 9..522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:25 Download gff for MXO02258.5prime
Subject Subject Range Query Range Percent Splice Strand
mael-RA 255..778 1..522 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:06 Download gff for MXO02258.5prime
Subject Subject Range Query Range Percent Splice Strand
mael-RA 255..778 1..522 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:06 Download gff for MXO02258.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22724558..22724685 1..128 96 -> Plus
3L 22724740..22724929 129..318 100 -> Plus
3L 22724986..22725191 319..522 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:25 Download gff for MXO02258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22718086..22718291 319..522 99   Plus
arm_3L 22717840..22718029 129..318 100 -> Plus
arm_3L 22717658..22717785 1..128 96 -> Plus