MXO02260.3prime Sequence
537 bp (537 high quality bases) assembled on 2007-01-19
> MXO02260.3prime
ATGGTCTAGAAAGCTTGCGATGCGACCGCTTTTGCTCGCCGTCGACGTGG
ACAGCTGTTCCAGGCGGGAGCACAGCTCCTGGGCCAGGCGCAGTTGATTC
GCAGCGGCAGCGGCACACGAGGTGGCGGCTCCAGCGCCTGCTCCCACGGG
CAACTGGACTCCGGCCACGACTTCCGGGTAGCTGATGCACACGCCCACCC
AGCGAGCTTGACTGCAGGCATGGGACATGGCGAAATCACGTTTCCATTGG
ACACCGCACTGGCCGTCGCACAGGGGACAGGGACGCTCCAGGCTGTAGCC
ACCGCATTCGCTGCAGTCGAGGGACACATGGTCGTCCGTCCAGGAGACGC
CGCAGGTGAAGCAGGAGCCCATGTGCTGGCGCAGCTCCTCAATGGTCAGC
ACGTTGTCCATGCTGATCTCCAGGGGACTGCCCACCAGATCTGGCAGCGA
GGCAGACAGACCGAGATTGTGATGCGACAGGGGACTGCAGATGTCGGCGA
TTTGGGGACCGTGAACACTGGCGATCGACATGTCGAC
MXO02260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4710-PB | 750 | smi21F-RB | 235..747 | 531..19 | 2565 | 100 | Minus |
| CG4710-PA | 516 | smi21F-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RC | 2130 | CG4710-RC | 535..1047 | 531..19 | 2565 | 100 | Minus |
| Pino-RA | 2079 | CG4710-RA | 484..996 | 531..19 | 2565 | 100 | Minus |
| Pino-RB | 1980 | CG4710-RB | 385..897 | 531..19 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1116441..1116690 | 226..475 | 1250 | 100 | Plus |
| 2L | 23513712 | 2L | 1115737..1115944 | 19..226 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 1117443..1117499 | 475..531 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:12 has no hits.
MXO02260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:53 Download gff for
MXO02260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4710-PA | 1..516 | 18..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:15 Download gff for
MXO02260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 379..903 | 13..537 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:03 Download gff for
MXO02260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 379..903 | 13..537 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:03 Download gff for
MXO02260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1116441..1116690 | 226..475 | 100 | <- | Plus |
| 2L | 1117444..1117505 | 476..537 | 95 | | Plus |
| 2L | 1115731..1115943 | 13..225 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:15 Download gff for
MXO02260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1115731..1115943 | 13..225 | 98 | <- | Plus |
| arm_2L | 1116441..1116690 | 226..475 | 100 | <- | Plus |
| arm_2L | 1117444..1117505 | 476..537 | 95 | | Plus |
MXO02260.5prime Sequence
798 bp (783 high quality bases) assembled on 2007-01-19
> MXO02260.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCC
MXO02260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:38:41 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:29:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 22:29:30 has no hits.
Blast to na_te.dros performed on 2014-11-28 22:29:31 has no hits.
MXO02260.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:00:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:00:35 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:04:53 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:04:53 has no hits.
