MXO02263.3prime Sequence
345 bp (272 high quality bases) assembled on 2007-01-19
> MXO02263.3prime
ATGGTCTAGAAAGCTTGCGACCATTTTACATTTAAATCTACGATTCGGCT
TGTTCATTTTGCGGCCCCTCCGCCCCTTGTTGTCCTTGTCCTTGCGCACT
TCACGCACCAGTGTGTAAAATGCATCGTCCACGCCCATGCGCGTCTTGGC
GGATGTCTCAATGTATGGAATGCCGTACTGTTTGGCCACCTCTCTTGCCT
GCTCGTTGTTAACGTTCCACGAGGCCAGATCACATTTGTTGCCCACCAAC
ACCATGGGCACCTCTTCGGCATCCTTTACGCGCTTGATCTGCTCACGGTA
GGTGCCGATCTCCTCGAAGGACTTCGCACTGTAGACGGCAAAGAC
MXO02263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9375-PA | 570 | Ras85D-RA | 241..564 | 345..22 | 1470 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ras85D-RA | 1958 | CG9375-RA | 682..1005 | 345..22 | 1530 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9511514..9511683 | 22..191 | 805 | 98.2 | Plus |
| 3R | 32079331 | 3R | 9511737..9511895 | 187..345 | 750 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 2359..2414 | 64..9 | 109 | 66.1 | Minus |
MXO02263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:53 Download gff for
MXO02263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9375-PA | 241..570 | 15..345 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:30 Download gff for
MXO02263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 682..1011 | 15..345 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:22 Download gff for
MXO02263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 682..1011 | 15..345 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:22 Download gff for
MXO02263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9511507..9511681 | 15..189 | 96 | <- | Plus |
| 3R | 9511740..9511895 | 190..345 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:30 Download gff for
MXO02263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5337229..5337403 | 15..189 | 96 | <- | Plus |
| arm_3R | 5337462..5337617 | 190..345 | 98 | | Plus |
MXO02263.5prime Sequence
413 bp (351 high quality bases) assembled on 2007-01-19
> MXO02263.5prime
CAGTCGACATGACGGAATACAAACTGGCCGTCGTTGGAGCCGGAGGCGTG
GGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTCGTGGACGA
GTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGTTATCGATG
GAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAGAGGAGTAC
TCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTCCTGCTGGT
CTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCACCTACCGTG
AGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGGTGCTGGTG
GGCAACAAATGTGATGTGGCCTCGGGGAACGTTAATAACGACCACGCAAG
AGAGGTGGCCAAA
MXO02263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9375-PA | 570 | Ras85D-RA | 1..405 | 9..413 | 1875 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ras85D-RA | 1958 | CG9375-RA | 442..846 | 9..413 | 1935 | 98.5 | Plus |
| R-RC | 2702 | CG1956-RC | 627..849 | 30..252 | 305 | 76.3 | Plus |
| R-RB | 2872 | CG1956-RB | 797..1019 | 30..252 | 305 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9511737..9511997 | 407..147 | 1230 | 98.1 | Minus |
| 3R | 32079331 | 3R | 9512153..9512291 | 147..9 | 680 | 99.3 | Minus |
| 3L | 28110227 | 3L | 1860968..1861190 | 252..30 | 305 | 75.8 | Minus |
| 3L | 28110227 | 3L | 4140054..4140142 | 175..263 | 205 | 82 | Plus |
| 2R | 25286936 | 2R | 16109166..16109231 | 226..161 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:44 has no hits.
MXO02263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:54 Download gff for
MXO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9375-PA | 1..402 | 9..410 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:52 Download gff for
MXO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 435..843 | 1..410 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:00 Download gff for
MXO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 435..843 | 1..410 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:00 Download gff for
MXO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9511731..9511996 | 148..410 | 96 | <- | Minus |
| 3R | 9512153..9512298 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:52 Download gff for
MXO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5337875..5338020 | 1..147 | 97 | | Minus |
| arm_3R | 5337453..5337718 | 148..410 | 96 | <- | Minus |
