Clone MXO02264 Report

Search the DGRC for MXO02264

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:64
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMSBP-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02264.3prime Sequence

644 bp (642 high quality bases) assembled on 2007-01-19

> MXO02264.3prime
ATGGTCTAGAAAGCTTGCACAGTCGGTAGAAGGAGTGGCCTGATCTTGTG
CGTTATTTTTGTTTGTTACATTGCTTTGCAAAATGTGACTTTCCTTTTCT
TGTTTGGTGTCATCAGTCTCAGTTTTCGACTTGGGTAGGTTCTTTCGCTC
TTGTTCATCATTGTTAACATTCTCCTCGTCCTCATCATCGTCATAGTTGG
TTGGTTCCTCGCCCTTGCGCAATAGCTTACCAACCAGCTCATATTTTTCC
TTAAACTGCATTTCCCATTCCCGCACAGAGTCCATTTCCACGGCACTTAA
ATCGCTCAGGTCATCGTATTCATCCTTGTCAATTGAAACCACGCTGAAAG
TGGCCAAGTTTCGCGAGGCATCTCTACCCGCAAAAGTTGCGTAGGGTCCA
CCTGGGCCGTAAAAACGCCTTCCTTTGCTGACATCGTAAACACTTCCGTT
GACGGCGACCAAAACACGGCCATCCGGCTGAGTTCCATCGTACTGGCGAA
GCTCCTTCACGGTAAAATCGCGTCGGATTTTGGGTAACTCAGGTTCGGAT
GGCTTTGCAACGCCCACGGATGGCACTTCGGTGCGATCCCGAACGATTTT
ATAGACCAGGAAGCAGATGATGGCCAGGAGGGCCAGGTTCATTG

MXO02264.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9066-PA 747 CG9066-RA 119..744 644..19 3130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 406..1031 644..19 3130 100 Minus
MSBP-RB 1420 CG9066-RB 323..948 644..19 3130 100 Minus
MSBP-RA 1487 CG9066-RA 390..1015 644..19 3130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889544 399..644 1230 100 Plus
X 23542271 X 15888039..15888269 19..249 1155 100 Plus
X 23542271 X 15888344..15888499 249..404 780 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:25:10 has no hits.

MXO02264.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:54 Download gff for MXO02264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 119..747 18..644 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:33 Download gff for MXO02264.3prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 390..1019 13..644 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:27 Download gff for MXO02264.3prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 390..1019 13..644 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:27 Download gff for MXO02264.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15888344..15888496 249..401 100 <- Plus
X 15889302..15889544 402..644 100   Plus
X 15888035..15888268 13..248 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:33 Download gff for MXO02264.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782377..15782529 249..401 100 <- Plus
arm_X 15783335..15783577 402..644 100   Plus
arm_X 15782068..15782301 13..248 98 <- Plus

MXO02264.5prime Sequence

557 bp (521 high quality bases) assembled on 2007-01-19

> MXO02264.5prime
CAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGGCCTACGAC
AAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTTCTGGGCAA
CATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCTCCTGGCCA
TCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCGAAGTGCCA
TCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAAATCCGACG
CGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCAGCCGGATG
GCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCAGCAAAGGA
AGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCGGGCAGAGA
TGCCTCGCGAAACTTGGCCACTTTCAACGTGGTTTCAATTGACAAGGATG
AATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACTCTGTGCGG
GAATGGGAAATGCAGTTTAAGGACAAATATGAGCTGGTTGGTAAGCTATT
GCGCAAG

MXO02264.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9066-PA 747 CG9066-RA 1..549 9..557 2670 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..836 9..557 2700 99.5 Plus
MSBP-RB 1420 CG9066-RB 205..753 9..557 2700 99.5 Plus
MSBP-RA 1487 CG9066-RA 272..820 9..557 2700 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 372..9 1820 100 Minus
X 23542271 X 15888344..15888499 522..367 750 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 23:34:23 has no hits.

MXO02264.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:54 Download gff for MXO02264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..549 9..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:08 Download gff for MXO02264.5prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..820 9..557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:30 Download gff for MXO02264.5prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..820 9..557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:30 Download gff for MXO02264.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15888234..15888268 523..557 97 <- Minus
X 15888344..15888496 370..522 98 <- Minus
X 15889302..15889662 9..369 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:08 Download gff for MXO02264.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782267..15782301 523..557 97 <- Minus
arm_X 15782377..15782529 370..522 98 <- Minus
arm_X 15783335..15783695 9..369 100   Minus