Clone MXO02265 Report

Search the DGRC for MXO02265

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:65
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptKlc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02265.3prime Sequence

445 bp (341 high quality bases) assembled on 2007-01-19

> MXO02265.3prime
ATGGTCTAGAAAGCTTGCTGGTTTCGCATTCTTCTCCTCAGAGAAATCCA
AATCCTCTTTAATTGCCTTCGATCGTCGCTTTTCGTTTGACGTTAGCAAT
TGTGAGAGCTTCGTTTGTTTAGCTAGATCGTAGGCTTCTTTTTTACTCCG
CATTGCACAGTCTTCCAGGGTTTCGGCCGCTTCAAACATGCCTTGACGTC
GGTAAAGTGCTCCCAGATTTTTTAGAGTGGTTGTGACCGTGGGCGAATCC
ACTTTAGCGGCCTTATGCCAACCGCCGTACTCGCCATATGGAGTGTTCTC
CCTGTTATCGAATTTGTGCTCCTCACGCTCCTCAGCCACCTGCCAAATGG
GCTTGTTTTTGCTGTCGATGGCTCCAAACTCACGTTCGTGGGCTCGCGTC
AAGACCTGCTTATAGAGGATTTCAGCTTCGGTGTATCTACCTTGC

MXO02265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5433-PA 1527 Klc-RA 1098..1524 445..19 2135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Klc-RB 1841 CG5433-RB 1215..1641 445..19 2135 100 Minus
Klc-RA 1843 CG5433-RA 1217..1643 445..19 2135 100 Minus
Klc-RC 1876 CG5433-RC 1253..1676 445..19 2080 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12746898..12747206 34..342 1545 100 Plus
3L 28110227 3L 12747273..12747380 338..445 540 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:46:13 has no hits.

MXO02265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:55 Download gff for MXO02265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5433-PA 1098..1527 15..445 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:27 Download gff for MXO02265.3prime
Subject Subject Range Query Range Percent Splice Strand
Klc-RA 1217..1646 15..445 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:08 Download gff for MXO02265.3prime
Subject Subject Range Query Range Percent Splice Strand
Klc-RA 1217..1646 15..445 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:08 Download gff for MXO02265.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12747275..12747380 340..445 100   Plus
3L 12746898..12747203 34..339 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:27 Download gff for MXO02265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12740375..12740480 340..445 100   Plus
arm_3L 12739998..12740303 34..339 100 <- Plus

MXO02265.5prime Sequence

839 bp (813 high quality bases) assembled on 2007-01-19

> MXO02265.5prime
CAGTCGACATGACGCAAATGTCGCAGGACGAAATCATAACCAATACGAAA
ACAGTCCTTCAAGGCCTCGAAGCCTTGCGAGTGGAGCATGTTTCGATTAT
GAACGGAATCGCCGAGGTGCAGAAGGACAATGAAAAGTCGGACATGCTGC
GAAAGAACATCGAGAACATCGAACTGGGCCTCAGCGAGGCCCAGGTGATG
ATGGCCCTGACATCCCATCTGCAGAACATCGAGGCCGAGAAGCACAAGCT
TAAGACACAGGTGCGCCGCCTCCACCAGGAGAACGCCTGGCTTCGCGACG
AGCTGGCCAACACTCAGCAAAAGTTCCAGGCATCCGAGCAGCTGGTGGCC
CAACTAGAGGAGGAGAAGAAGCACCTGGAGTTCATGGCGTCCGTGAAGAA
GTACGACGAGAATCAGGAGCAGGACGACGCTTGCGACAAGTCCCGCACCG
ATCCCGTGGTCGAGCTATTCCCGGACGAGGAAAACGAGGACAGACACAAC
ATGTCGCCCACTCCGCCCAGCCAGTTCGCCAACCAGACTTCCGGCTACGA
GATTCCAGCGCGTCTCCGTACTCTGCACAACCTGGTCATTCAGTATGCAT
CGCAGGGAAGATACGAGGTAGCCGTTCCCCTCTGCAAGCAAGCATTGGAA
GATCTCGAAAGGACAAGTGGTCACGACCATCCCGATGTAGCAACCATGCT
GAACATTTTGGCTCTCGTGTACCGCGATCAGAACAAGTATAAGGAGGCCG
CCAATTTACTCAACGACGCTCTGTCGATTCGAGGAAAGACACTGGGCGAG
AACCATCCAGCCGTGGCGGCCACGTTGAACACTTGGCCG

MXO02265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5433-PA 1527 Klc-RA 1..832 9..839 4120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Klc-RC 1876 CG5433-RC 156..987 9..839 4135 99.9 Plus
Klc-RB 1841 CG5433-RB 118..949 9..839 4135 99.9 Plus
Klc-RA 1843 CG5433-RA 120..951 9..839 4135 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12748056..12748657 610..9 3010 100 Minus
3L 28110227 3L 12747821..12747943 731..609 615 100 Minus
3L 28110227 3L 12747655..12747757 831..729 515 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:34:29 has no hits.

MXO02265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:55 Download gff for MXO02265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5433-PA 1..832 9..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:12 Download gff for MXO02265.5prime
Subject Subject Range Query Range Percent Splice Strand
Klc-RA 113..951 1..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:33 Download gff for MXO02265.5prime
Subject Subject Range Query Range Percent Splice Strand
Klc-RA 113..951 1..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:33 Download gff for MXO02265.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12747821..12747941 611..731 100 <- Minus
3L 12747646..12747754 732..839 99 <- Minus
3L 12748056..12748664 1..610 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:12 Download gff for MXO02265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12740746..12740854 732..839 99 <- Minus
arm_3L 12740921..12741041 611..731 100 <- Minus
arm_3L 12741156..12741764 1..610 99   Minus