MXO02272.5prime Sequence
805 bp (644 high quality bases) assembled on 2007-01-19
> MXO02272.5prime
CAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGAGACGCCGA
CATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGGGATCGACG
CCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGATGTACCGC
CGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCATGCAGGCG
TCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAAACGGCAGT
GCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCTGTACGTTG
GCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGTTCTTCAAC
CAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGTCCCGTCTT
GGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGAATTCCGAT
CGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCAATTTGAAG
GGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCCATGCCGGG
TATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAGTGGAGTTA
TTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCGGAGGTCAC
CACACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTGTCGTTTGGC
AAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGCGTTGAGTAA
GGGTTATGCTTTCTGTGAATATGTCAGATCTAGCATCACAGATCAGTCGA
TTGCT
MXO02272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9998-PA | 1251 | U2af50-RA | 1..798 | 9..805 | 3825 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1473 | CG9998-RD | 163..960 | 9..805 | 3890 | 99.4 | Plus |
| U2af50-RA | 1527 | CG9998-RA | 217..1014 | 9..805 | 3890 | 99.4 | Plus |
| U2af50-RC | 1371 | CG9998-RC | 73..858 | 21..805 | 3830 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16357643..16358207 | 585..21 | 2825 | 100 | Minus |
| X | 23542271 | X | 16357295..16357419 | 796..672 | 535 | 95.2 | Minus |
| X | 23542271 | X | 16357481..16357573 | 676..585 | 400 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:16 has no hits.
MXO02272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:56 Download gff for
MXO02272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9998-PA | 1..798 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:28 Download gff for
MXO02272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1014 | 1..805 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:10 Download gff for
MXO02272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1014 | 1..805 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:10 Download gff for
MXO02272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16357289..16357417 | 674..800 | 96 | <- | Minus |
| X | 16357484..16357572 | 586..673 | 97 | <- | Minus |
| X | 16357643..16358206 | 22..585 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:28 Download gff for
MXO02272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16251322..16251450 | 674..800 | 96 | <- | Minus |
| arm_X | 16251517..16251605 | 586..673 | 97 | <- | Minus |
| arm_X | 16251676..16252239 | 22..585 | 100 | <- | Minus |
