MXO02276.3prime Sequence
685 bp (583 high quality bases) assembled on 2007-01-19
> MXO02276.3prime
ATGGTCTAGAAAGCTTGCGCGGCCGAGAATGTTGCGCGACCACTGTTTGA
CCATTGGCTTGGTCTTGGACTGCTCGATGCGTTCCGCCTCCAGCATTTGT
TCGGCCAGCTTGCGCTGGTTCTCCCGGAACTGGTTGATGGGATCGTCGAA
CTGGCGATAGTAGTGGAGCACCTCGCGCACGTCGTCCACGTTGTTCTGCG
CAATTATCTTTAGGAAAGCGATAAGGTCCAGCAGTTGGCCATCATCGTCG
TTGCCATGCCAGCGGGCCAAGCCGAATGTGTTGTCCGGATGCATCTTGGT
GGCATTCGCATCCCAGTCCACAACAATCACCTTCTTGAGGTCGCGATTAA
GGTTGTCCAGGTTCTTCACATGATGGCCGTCCACACAGTGCGTGGCATCC
CTGACCAGGCGGTACATAATGTAGCCGTTGGGATCGAGGGCATCCAGGAT
GGGGAACACGGTCATGCCCTGTTCGGCGGTGAAGACGACAATTTCAAAGT
CCTTGGCGCACTCGGCCAGAAAGTGGTCGACGCCGGGACGCTTCTTGAAG
CGCCAGCCAGTTTGGTAAGTCCAGTCCGGATGCACCCGCACGTCCTTCAT
CTCCAGCACAAGCGTGTAGCGCGGCTGCACGTACGGCGGCTTGAGCGGAT
CGGGCAAGCAATTGACGCGCGACGGCTCCTGGAAT
MXO02276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2713-PA | 1287 | CG2713-RA | 647..1284 | 656..19 | 3140 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 762..1426 | 683..19 | 3220 | 99.1 | Minus |
ttm50-RA | 1728 | CG2713-RA | 762..1426 | 683..19 | 3220 | 99.1 | Minus |
ttm2-RA | 1513 | CG12313-RA | 770..1134 | 660..295 | 470 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2730948..2731301 | 330..683 | 1650 | 97.7 | Plus |
X | 23542271 | X | 2730519..2730706 | 19..206 | 940 | 100 | Plus |
X | 23542271 | X | 2730766..2730891 | 207..332 | 630 | 100 | Plus |
3L | 28110227 | 3L | 275932..276288 | 651..295 | 450 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:58 has no hits.
MXO02276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:57 Download gff for
MXO02276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 619..1287 | 18..685 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:56 Download gff for
MXO02276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 761..1426 | 19..685 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:05 Download gff for
MXO02276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 761..1426 | 19..685 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:05 Download gff for
MXO02276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2730519..2730706 | 19..206 | 100 | <- | Plus |
X | 2730766..2730889 | 207..330 | 100 | <- | Plus |
X | 2730949..2731302 | 331..685 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:56 Download gff for
MXO02276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2624552..2624739 | 19..206 | 100 | <- | Plus |
arm_X | 2624799..2624922 | 207..330 | 100 | <- | Plus |
arm_X | 2624982..2625335 | 331..685 | 98 | | Plus |
MXO02276.5prime Sequence
757 bp (414 high quality bases) assembled on 2007-01-19
> MXO02276.5prime
CAATCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCCAGTTGCTG
CGCGGCCTTAACACGCCGCGTCTTCTTACCCACATCCACCAGCACCGCGC
ATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCACCAGCACC
ACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTTGCACAGCA
CTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACAGCGCGTGG
CTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCCCAATGATG
CGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCTTTCCTCAG
ACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAGAAGCGCGA
GGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAACACATGAAGCTGG
GCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCTGGGCCGTC
TACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCCATCGAGGA
CGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAACGGATGTGGA
AGAGCATTCACTACTATCATCGCATGATCCAAGAGCCGTCGCGCGCCAAA
CTGCTGCCCGATCCGCTCAAGCAGCCGTACGTGCAGCCGCGCTACACGCT
TGTGCAGGAGATGAAGGACGTGCTGCTGCATCCGGACTGGACTTACCAAA
CTGGCTG
MXO02276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2713-PA | 1287 | CG2713-RA | 1..749 | 9..757 | 3520 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 142..891 | 8..757 | 3615 | 98.8 | Plus |
ttm50-RA | 1728 | CG2713-RA | 142..891 | 8..757 | 3615 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2731172..2731478 | 757..451 | 1445 | 98 | Minus |
X | 23542271 | X | 2731790..2732049 | 267..8 | 1285 | 99.6 | Minus |
X | 23542271 | X | 2731534..2731717 | 451..268 | 890 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:03 has no hits.
MXO02276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:58 Download gff for
MXO02276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 1..749 | 9..757 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:09 Download gff for
MXO02276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 138..891 | 1..757 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:41 Download gff for
MXO02276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 138..891 | 1..757 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:41 Download gff for
MXO02276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2731172..2731477 | 452..757 | 98 | <- | Minus |
X | 2731534..2731717 | 268..451 | 98 | <- | Minus |
X | 2731790..2732052 | 1..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:09 Download gff for
MXO02276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2625205..2625510 | 452..757 | 98 | <- | Minus |
arm_X | 2625567..2625750 | 268..451 | 98 | <- | Minus |
arm_X | 2625823..2626085 | 1..267 | 98 | | Minus |