Clone MXO02276 Report

Search the DGRC for MXO02276

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:76
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptttm50-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02276.3prime Sequence

685 bp (583 high quality bases) assembled on 2007-01-19

> MXO02276.3prime
ATGGTCTAGAAAGCTTGCGCGGCCGAGAATGTTGCGCGACCACTGTTTGA
CCATTGGCTTGGTCTTGGACTGCTCGATGCGTTCCGCCTCCAGCATTTGT
TCGGCCAGCTTGCGCTGGTTCTCCCGGAACTGGTTGATGGGATCGTCGAA
CTGGCGATAGTAGTGGAGCACCTCGCGCACGTCGTCCACGTTGTTCTGCG
CAATTATCTTTAGGAAAGCGATAAGGTCCAGCAGTTGGCCATCATCGTCG
TTGCCATGCCAGCGGGCCAAGCCGAATGTGTTGTCCGGATGCATCTTGGT
GGCATTCGCATCCCAGTCCACAACAATCACCTTCTTGAGGTCGCGATTAA
GGTTGTCCAGGTTCTTCACATGATGGCCGTCCACACAGTGCGTGGCATCC
CTGACCAGGCGGTACATAATGTAGCCGTTGGGATCGAGGGCATCCAGGAT
GGGGAACACGGTCATGCCCTGTTCGGCGGTGAAGACGACAATTTCAAAGT
CCTTGGCGCACTCGGCCAGAAAGTGGTCGACGCCGGGACGCTTCTTGAAG
CGCCAGCCAGTTTGGTAAGTCCAGTCCGGATGCACCCGCACGTCCTTCAT
CTCCAGCACAAGCGTGTAGCGCGGCTGCACGTACGGCGGCTTGAGCGGAT
CGGGCAAGCAATTGACGCGCGACGGCTCCTGGAAT

MXO02276.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2713-PA 1287 CG2713-RA 647..1284 656..19 3140 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 762..1426 683..19 3220 99.1 Minus
ttm50-RA 1728 CG2713-RA 762..1426 683..19 3220 99.1 Minus
ttm2-RA 1513 CG12313-RA 770..1134 660..295 470 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2730948..2731301 330..683 1650 97.7 Plus
X 23542271 X 2730519..2730706 19..206 940 100 Plus
X 23542271 X 2730766..2730891 207..332 630 100 Plus
3L 28110227 3L 275932..276288 651..295 450 75.1 Minus
Blast to na_te.dros performed on 2014-11-28 20:30:58 has no hits.

MXO02276.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:57 Download gff for MXO02276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 619..1287 18..685 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:56 Download gff for MXO02276.3prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 761..1426 19..685 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:05 Download gff for MXO02276.3prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 761..1426 19..685 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:05 Download gff for MXO02276.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2730519..2730706 19..206 100 <- Plus
X 2730766..2730889 207..330 100 <- Plus
X 2730949..2731302 331..685 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:56 Download gff for MXO02276.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2624552..2624739 19..206 100 <- Plus
arm_X 2624799..2624922 207..330 100 <- Plus
arm_X 2624982..2625335 331..685 98   Plus

MXO02276.5prime Sequence

757 bp (414 high quality bases) assembled on 2007-01-19

> MXO02276.5prime
CAATCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCCAGTTGCTG
CGCGGCCTTAACACGCCGCGTCTTCTTACCCACATCCACCAGCACCGCGC
ATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCACCAGCACC
ACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTTGCACAGCA
CTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACAGCGCGTGG
CTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCCCAATGATG
CGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCTTTCCTCAG
ACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAGAAGCGCGA
GGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAACACATGAAGCTGG
GCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCTGGGCCGTC
TACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCCATCGAGGA
CGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAACGGATGTGGA
AGAGCATTCACTACTATCATCGCATGATCCAAGAGCCGTCGCGCGCCAAA
CTGCTGCCCGATCCGCTCAAGCAGCCGTACGTGCAGCCGCGCTACACGCT
TGTGCAGGAGATGAAGGACGTGCTGCTGCATCCGGACTGGACTTACCAAA
CTGGCTG

MXO02276.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2713-PA 1287 CG2713-RA 1..749 9..757 3520 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 142..891 8..757 3615 98.8 Plus
ttm50-RA 1728 CG2713-RA 142..891 8..757 3615 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2731172..2731478 757..451 1445 98 Minus
X 23542271 X 2731790..2732049 267..8 1285 99.6 Minus
X 23542271 X 2731534..2731717 451..268 890 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 20:22:03 has no hits.

MXO02276.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:58 Download gff for MXO02276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 1..749 9..757 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:09 Download gff for MXO02276.5prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 138..891 1..757 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:41 Download gff for MXO02276.5prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 138..891 1..757 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:41 Download gff for MXO02276.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2731172..2731477 452..757 98 <- Minus
X 2731534..2731717 268..451 98 <- Minus
X 2731790..2732052 1..267 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:09 Download gff for MXO02276.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2625205..2625510 452..757 98 <- Minus
arm_X 2625567..2625750 268..451 98 <- Minus
arm_X 2625823..2626085 1..267 98   Minus