Clone MXO02277 Report

Search the DGRC for MXO02277

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:77
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11163-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02277.3prime Sequence

474 bp (446 high quality bases) assembled on 2007-01-19

> MXO02277.3prime
ATGGTCTAGAAAGCTTGCCTCTGTTGTAGGTTCCAATTGAATGGTTGAAT
GCTTGATGTTATATCTTGGGCTGGATACGAGCGCCGTGGCAGCCTGCAGT
ACCTCATTGCCGTCCGCTCGGGAGTCTGTAACGAGATGCACCATCAGCAC
CCTTTGCTGAGAGGTCTGTTGCCACACGTTTAGGTGGTGCAAAGATCTGA
CACCTTCGATGCTGCCCAGCTCCAAGTGCAGAGTGCGCATATTAAGGTTT
TGTGGAACTGCATTCACGATGATGCCCAAAGACTCCCGAAACAGACGCAA
GGTAGTCATTATTACAATAATTGAGAATATGAGAGTACACAGGGGATCAG
CATACTTGGCACCTGGACAAACTTTAATTAGGACGGCGGCCAAAAAAACG
CCAATGCTCTGCACTAGGTCTCCAATCACATGAATCATAGCAGCACGCAG
GTTCAGGTTTTTATCCTCGTGTGC

MXO02277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11163-PA 1497 CG11163-RA 1039..1494 474..19 2280 100 Minus
CG11163-PB 1497 CG11163-RB 1039..1494 474..19 2280 100 Minus
CG11163-PC 1497 CG11163-RC 1039..1494 474..19 2280 100 Minus
CG11163-PD 1497 CG11163-RD 1039..1494 474..19 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 1340..1795 474..19 2280 100 Minus
ZnT41F-RC 2042 CG11163-RC 1399..1854 474..19 2280 100 Minus
ZnT41F-RB 2461 CG11163-RB 1818..2273 474..19 2280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5775260..5775429 197..366 850 100 Plus
2R 25286936 2R 5774964..5775078 19..133 560 99.1 Plus
2R 25286936 2R 5775730..5775837 367..474 540 100 Plus
2R 25286936 2R 5775126..5775199 126..199 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:46:19 has no hits.

MXO02277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:58 Download gff for MXO02277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PD 1039..1497 18..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:30 Download gff for MXO02277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 1818..2273 19..474 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:12 Download gff for MXO02277.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 1818..2273 19..474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:12 Download gff for MXO02277.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5774964..5775070 19..125 100 <- Plus
2R 5775126..5775196 126..196 100 <- Plus
2R 5775260..5775429 197..366 100 <- Plus
2R 5775730..5775837 367..474 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:30 Download gff for MXO02277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1662469..1662575 19..125 100 <- Plus
arm_2R 1662631..1662701 126..196 100 <- Plus
arm_2R 1662765..1662934 197..366 100 <- Plus
arm_2R 1663235..1663342 367..474 100   Plus

MXO02277.5prime Sequence

893 bp (814 high quality bases) assembled on 2007-01-19

> MXO02277.5prime
CAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGTTGCCCAAC
GCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTTGATGATAA
TCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGATGATCGAC
TGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATAGTGTTAAT
AGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCAGAGGAGCA
AACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGCGAGAAACC
AGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCAATCATCAA
CCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAGGCCAAGTA
TAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGATCATTGAAT
TTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGGATGCCGCC
CATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTCGCCATATG
GATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTACAAACGCT
TTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGTTCGTAACT
ACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAAGACTTTGA
ATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCATAGTCATAA
ATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGAACGGGAAT
GGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCACAGTCACGG
AAACGGACATGAGCAAAACGATAGTCTTTCACAAACACGTTCC

MXO02277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11163-PA 1497 CG11163-RA 1..885 9..893 4400 99.8 Plus
CG11163-PB 1497 CG11163-RB 1..885 9..893 4400 99.8 Plus
CG11163-PC 1497 CG11163-RC 1..885 9..893 4400 99.8 Plus
CG11163-PD 1497 CG11163-RD 1..885 9..893 4400 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 300..1186 7..893 4420 99.9 Plus
ZnT41F-RC 2042 CG11163-RC 359..1245 7..893 4420 99.9 Plus
ZnT41F-RB 2461 CG11163-RB 778..1664 7..893 4420 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5778201..5778496 302..7 1480 100 Minus
2R 25286936 2R 5777712..5777875 603..440 820 100 Minus
2R 25286936 2R 5777364..5777518 757..603 775 100 Minus
2R 25286936 2R 5777989..5778129 440..300 705 100 Minus
2R 25286936 2R 5776456..5776591 893..758 665 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 19:46:00 has no hits.

MXO02277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:58 Download gff for MXO02277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PD 1..885 9..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:29 Download gff for MXO02277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 772..1664 1..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:20 Download gff for MXO02277.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 772..1664 1..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:20 Download gff for MXO02277.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5777712..5777874 441..603 100 <- Minus
2R 5777989..5778126 303..440 100 <- Minus
2R 5778201..5778499 1..302 98   Minus
2R 5776456..5776591 758..893 99 <- Minus
2R 5777364..5777517 604..757 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:29 Download gff for MXO02277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1665217..1665379 441..603 100 <- Minus
arm_2R 1665494..1665631 303..440 100 <- Minus
arm_2R 1663961..1664096 758..893 99 <- Minus
arm_2R 1664869..1665022 604..757 100 <- Minus
arm_2R 1665706..1666004 1..302 98   Minus