MXO02277.3prime Sequence
474 bp (446 high quality bases) assembled on 2007-01-19
> MXO02277.3prime
ATGGTCTAGAAAGCTTGCCTCTGTTGTAGGTTCCAATTGAATGGTTGAAT
GCTTGATGTTATATCTTGGGCTGGATACGAGCGCCGTGGCAGCCTGCAGT
ACCTCATTGCCGTCCGCTCGGGAGTCTGTAACGAGATGCACCATCAGCAC
CCTTTGCTGAGAGGTCTGTTGCCACACGTTTAGGTGGTGCAAAGATCTGA
CACCTTCGATGCTGCCCAGCTCCAAGTGCAGAGTGCGCATATTAAGGTTT
TGTGGAACTGCATTCACGATGATGCCCAAAGACTCCCGAAACAGACGCAA
GGTAGTCATTATTACAATAATTGAGAATATGAGAGTACACAGGGGATCAG
CATACTTGGCACCTGGACAAACTTTAATTAGGACGGCGGCCAAAAAAACG
CCAATGCTCTGCACTAGGTCTCCAATCACATGAATCATAGCAGCACGCAG
GTTCAGGTTTTTATCCTCGTGTGC
MXO02277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11163-PA | 1497 | CG11163-RA | 1039..1494 | 474..19 | 2280 | 100 | Minus |
CG11163-PB | 1497 | CG11163-RB | 1039..1494 | 474..19 | 2280 | 100 | Minus |
CG11163-PC | 1497 | CG11163-RC | 1039..1494 | 474..19 | 2280 | 100 | Minus |
CG11163-PD | 1497 | CG11163-RD | 1039..1494 | 474..19 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-RD | 1983 | CG11163-RD | 1340..1795 | 474..19 | 2280 | 100 | Minus |
ZnT41F-RC | 2042 | CG11163-RC | 1399..1854 | 474..19 | 2280 | 100 | Minus |
ZnT41F-RB | 2461 | CG11163-RB | 1818..2273 | 474..19 | 2280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5775260..5775429 | 197..366 | 850 | 100 | Plus |
2R | 25286936 | 2R | 5774964..5775078 | 19..133 | 560 | 99.1 | Plus |
2R | 25286936 | 2R | 5775730..5775837 | 367..474 | 540 | 100 | Plus |
2R | 25286936 | 2R | 5775126..5775199 | 126..199 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:19 has no hits.
MXO02277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:58 Download gff for
MXO02277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-PD | 1039..1497 | 18..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:30 Download gff for
MXO02277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RB | 1818..2273 | 19..474 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:12 Download gff for
MXO02277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT41F-RB | 1818..2273 | 19..474 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:12 Download gff for
MXO02277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5774964..5775070 | 19..125 | 100 | <- | Plus |
2R | 5775126..5775196 | 126..196 | 100 | <- | Plus |
2R | 5775260..5775429 | 197..366 | 100 | <- | Plus |
2R | 5775730..5775837 | 367..474 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:30 Download gff for
MXO02277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1662469..1662575 | 19..125 | 100 | <- | Plus |
arm_2R | 1662631..1662701 | 126..196 | 100 | <- | Plus |
arm_2R | 1662765..1662934 | 197..366 | 100 | <- | Plus |
arm_2R | 1663235..1663342 | 367..474 | 100 | | Plus |
MXO02277.5prime Sequence
893 bp (814 high quality bases) assembled on 2007-01-19
> MXO02277.5prime
CAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGTTGCCCAAC
GCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTTGATGATAA
TCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGATGATCGAC
TGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATAGTGTTAAT
AGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCAGAGGAGCA
AACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGCGAGAAACC
AGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCAATCATCAA
CCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAGGCCAAGTA
TAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGATCATTGAAT
TTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGGATGCCGCC
CATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTCGCCATATG
GATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTACAAACGCT
TTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGTTCGTAACT
ACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAAGACTTTGA
ATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCATAGTCATAA
ATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGAACGGGAAT
GGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCACAGTCACGG
AAACGGACATGAGCAAAACGATAGTCTTTCACAAACACGTTCC
MXO02277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11163-PA | 1497 | CG11163-RA | 1..885 | 9..893 | 4400 | 99.8 | Plus |
CG11163-PB | 1497 | CG11163-RB | 1..885 | 9..893 | 4400 | 99.8 | Plus |
CG11163-PC | 1497 | CG11163-RC | 1..885 | 9..893 | 4400 | 99.8 | Plus |
CG11163-PD | 1497 | CG11163-RD | 1..885 | 9..893 | 4400 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-RD | 1983 | CG11163-RD | 300..1186 | 7..893 | 4420 | 99.9 | Plus |
ZnT41F-RC | 2042 | CG11163-RC | 359..1245 | 7..893 | 4420 | 99.9 | Plus |
ZnT41F-RB | 2461 | CG11163-RB | 778..1664 | 7..893 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5778201..5778496 | 302..7 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 5777712..5777875 | 603..440 | 820 | 100 | Minus |
2R | 25286936 | 2R | 5777364..5777518 | 757..603 | 775 | 100 | Minus |
2R | 25286936 | 2R | 5777989..5778129 | 440..300 | 705 | 100 | Minus |
2R | 25286936 | 2R | 5776456..5776591 | 893..758 | 665 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:00 has no hits.
MXO02277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:58 Download gff for
MXO02277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-PD | 1..885 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:29 Download gff for
MXO02277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RB | 772..1664 | 1..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:20 Download gff for
MXO02277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT41F-RB | 772..1664 | 1..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:20 Download gff for
MXO02277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5777712..5777874 | 441..603 | 100 | <- | Minus |
2R | 5777989..5778126 | 303..440 | 100 | <- | Minus |
2R | 5778201..5778499 | 1..302 | 98 | | Minus |
2R | 5776456..5776591 | 758..893 | 99 | <- | Minus |
2R | 5777364..5777517 | 604..757 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:29 Download gff for
MXO02277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1665217..1665379 | 441..603 | 100 | <- | Minus |
arm_2R | 1665494..1665631 | 303..440 | 100 | <- | Minus |
arm_2R | 1663961..1664096 | 758..893 | 99 | <- | Minus |
arm_2R | 1664869..1665022 | 604..757 | 100 | <- | Minus |
arm_2R | 1665706..1666004 | 1..302 | 98 | | Minus |