MXO02286.5prime Sequence
742 bp (656 high quality bases) assembled on 2007-01-19
> MXO02286.5prime
CAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTGGTGGTTAC
ATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGGCTGATCTA
TGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCATTCTCTTGG
AGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGCTGAGCAGC
GTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTGAATCCCAT
TCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCTCTCAAGGAGGCAG
CCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGGAGGAGTTG
GAGAAGGAGAAGCCCTTCCTGGGCGTGCCCATTACCACCAAGGATTGCAT
ATCCGTCAAGGGCATGCTGCACACAGCTGGACTCTTCGAACGTCGGGATG
TGCGTGCTGCGCGGGATGCGGACGCTATGGCCTTGATGCGCAAGGCGGGA
GCCATTCCCATAGCCCTCACAAATGTTTCCGAGGTGTGCATGTGGTGGGA
GAGCAACAATACGGTGCACGGCAGGACAAGGAATGCCTACGACACTAACC
GCATTGTCGGTGGCTCCAGCGGTGGCGAGGGCTGCATACAGTCGGCGGCT
GCCTCCGCCTTGGTTGGGCTCCGACTTGGGGCTCCATTCGCATGCCGCCT
TTTCATGCATCTTTGCCACAGCCCGCAGTTGGCGCTCCATGC
MXO02286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PD | 1590 | CG8839-RD | 1..692 | 9..696 | 3300 | 99.2 | Plus |
| CG8839-PC | 1590 | CG8839-RC | 1..692 | 9..696 | 3300 | 99.2 | Plus |
| CG8839-PA | 1590 | CG8839-RA | 1..692 | 9..696 | 3300 | 99.2 | Plus |
| CG8839-PE | 1590 | CG8839-RE | 1..692 | 9..696 | 3300 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..919 | 9..720 | 3380 | 98.8 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..930 | 9..720 | 3380 | 98.8 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..991 | 9..720 | 3380 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12340852..12341141 | 696..411 | 1275 | 97.6 | Minus |
| 2R | 25286936 | 2R | 12341209..12341431 | 412..190 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12341483..12341670 | 196..9 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:05 has no hits.
MXO02286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:00 Download gff for
MXO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PE | 1..721 | 9..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:20 Download gff for
MXO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..991 | 1..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:29 Download gff for
MXO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..991 | 1..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:29 Download gff for
MXO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12340823..12341140 | 412..720 | 97 | <- | Minus |
| 2R | 12341210..12341429 | 192..411 | 100 | <- | Minus |
| 2R | 12341488..12341676 | 1..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:20 Download gff for
MXO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8228328..8228645 | 412..720 | 97 | <- | Minus |
| arm_2R | 8228715..8228934 | 192..411 | 100 | <- | Minus |
| arm_2R | 8228993..8229181 | 1..191 | 97 | | Minus |
