MXO02288.5prime Sequence
888 bp (795 high quality bases) assembled on 2007-01-19
> MXO02288.5prime
CAGTCGACATGAGAGACTCGGCAGCACATGCGAGTCCGGCGGCAGCGGCA
ACGAGCACGCAGAAGTGGATCGTTTGCCGGGTTTGCCTGCAGCAGCCCAA
GGAGCCCATGGCCAGCATTTTCAACGACGATTCGGAAAAGGATCTGACCC
ACATGATTCGCGAGTGCGGCGGAGTGCCCATCAAACAGTTCGATCACTAT
CCGGACAAGATATGCGAGAAGTGCTTCAAGGTGCTGAAAATGGCATTTAA
GTTTCGAGAGACCTGCCAAAGATCGTACGGCCATCTGCGCCAGTTCGTTG
GACCCGTAGAGGTGGAGCAGCGACCACCGGAGAAAAAGGGCTCAGAGACA
GCCACCAAGCTGGAGCCGGATGTCGATCCCGATGAGGCGGAGCAGGAGCC
AGAGCATGACGAGGAAGACGAGGATGTGGACCTGGACGAGAGCCACTATG
CCGAGGCGGACGATGCCGCCGAAACGCAGGGTGGTGTCTTCCATGACGAG
ATTGAGGATGGTATCCTCGTTGAGCTGGAAAAGGATCGGATTGTGCACGT
GAAGAACGAGCAGGTGGAGGAGGACGGCATAATCGAGGAGGTTTATGACG
TGTATGAGACGTACGAGGGCGACCTCATCCCAGATCAGGGCTATGACCAC
GAGATGGCCGATCAAGCCCTGTCCGAGTTATCTGCCGAAATCGAATACCT
GGACCAGGTCGAGCATGATCAGTTGACCGAAAGTGCCCACGAGGATGATG
CGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCTCAAAAAGC
GTTCGCGCGTCCATCCATGCGCGGAATGCCCACCAGCGGAGAGTGAATCC
CCGCAGGTCAGCTACATCGACGGCCTCGGTGGCTGTAA
MXO02288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-PA | 1566 | CG4936-RA | 1..879 | 9..887 | 4320 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-RA | 1824 | CG4936-RA | 118..996 | 9..887 | 4350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20032165..20032872 | 180..887 | 3495 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20031940..20032110 | 9..179 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:07 has no hits.
MXO02288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:01 Download gff for
MXO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-PA | 1..878 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:19 Download gff for
MXO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 114..999 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:50 Download gff for
MXO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 111..996 | 1..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:50 Download gff for
MXO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20031933..20032110 | 1..179 | 98 | -> | Plus |
| 3R | 20032165..20032872 | 180..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:19 Download gff for
MXO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15857655..15857832 | 1..179 | 98 | -> | Plus |
| arm_3R | 15857887..15858594 | 180..888 | 99 | | Plus |
