MXO02289.5prime Sequence
788 bp (764 high quality bases) assembled on 2007-01-19
> MXO02289.5prime
CAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGCTGGCCCGG
AGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGGGTCAGCAG
TAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGACAGTCGAGA
TTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAACTCTGGGT
AGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCAGAGCTCAA
GACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTTGAAATCAC
TGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCATCTATTAT
GGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAGTGCGGCTT
CCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGTGGTCAACA
AGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCGATGTGAAG
GTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTGCCGGTGGA
TTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTTGAGACAAT
CCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACGACAACGAT
CTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAGAGTTTTCG
AGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAATTTTTCCG
CCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCG
MXO02289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7175-PA | 1683 | CG7175-RA | 1..780 | 9..788 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf5-RA | 1999 | CG7175-RA | 253..1032 | 9..788 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18222599..18223189 | 788..198 | 2955 | 100 | Minus |
| 2R | 25286936 | 2R | 3525411..3526041 | 788..132 | 2525 | 93 | Minus |
| 3R | 32079331 | 3R | 18223238..18223430 | 201..9 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:09 has no hits.
MXO02289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:02 Download gff for
MXO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7175-PA | 1..780 | 9..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:21 Download gff for
MXO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf5-RA | 253..1032 | 9..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:52 Download gff for
MXO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf5-RA | 253..1032 | 9..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:52 Download gff for
MXO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18222599..18223188 | 199..788 | 100 | <- | Minus |
| 3R | 18223241..18223430 | 9..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:21 Download gff for
MXO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14048321..14048910 | 199..788 | 100 | <- | Minus |
| arm_3R | 14048963..14049152 | 9..198 | 100 | | Minus |
