MXO02290.5prime Sequence
811 bp (751 high quality bases) assembled on 2007-01-19
> MXO02290.5prime
CAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACAGGAACTTG
CAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACGCCTCTATC
ACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCACCATCGGTC
ATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCGGCGTGCAG
ACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATCAAGCTGGG
TTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTGCCCGCGCC
CGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCTTGCCCTGC
ACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACATGTGAGCTT
CGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTTGAACGGTG
CTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATGAATCCTGT
CCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATTATGAAGCT
GAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAAGGAGAGCC
AGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGGGCACCGTA
GCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAGTACAACAT
CGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCCGCCGCGTG
ACTTNCATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCGACGTGAAC
AAGCCAGGCTG
MXO02290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6476-PB | 1428 | Su(var)3-9-RB | 1..803 | 9..811 | 3971 | 99.7 | Plus |
| CG6476-PC | 1404 | Su(var)3-9-RC | 42..779 | 74..811 | 3646 | 99.7 | Plus |
| CG6476-PA | 1908 | Su(var)3-9-RA | 1..241 | 9..249 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2gamma-RD | 2062 | CG43665-RD | 110..914 | 7..811 | 3999 | 99.8 | Plus |
| eIF-2gamma-RB | 1922 | CG43665-RB | 110..914 | 7..811 | 3999 | 99.8 | Plus |
| eIF-2gamma-RC | 1886 | CG43665-RC | 141..878 | 74..811 | 3664 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15259059..15259388 | 811..482 | 1609 | 99.1 | Minus |
| 3R | 32079331 | 3R | 15259449..15259687 | 487..249 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 15262545..15262722 | 251..74 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 15263281..15263349 | 75..7 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:33 has no hits.
MXO02290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:02 Download gff for
MXO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6476-PB | 1..803 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:38 Download gff for
MXO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RB | 105..914 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:13 Download gff for
MXO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RB | 105..914 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:13 Download gff for
MXO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15259059..15259383 | 487..811 | 99 | <- | Minus |
| 3R | 15259450..15259686 | 250..486 | 100 | <- | Minus |
| 3R | 15262547..15262721 | 75..249 | 100 | <- | Minus |
| 3R | 15263282..15263354 | 1..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:38 Download gff for
MXO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11084781..11085105 | 487..811 | 99 | <- | Minus |
| arm_3R | 11085172..11085408 | 250..486 | 100 | <- | Minus |
| arm_3R | 11088269..11088443 | 75..249 | 100 | <- | Minus |
| arm_3R | 11089004..11089076 | 1..74 | 97 | | Minus |
