MXO02301.3prime Sequence
798 bp (696 high quality bases) assembled on 2007-01-19
> MXO02301.3prime
ATGGTCTAGAAAGCTTGCCTCCAGTTTCATCGCCAGGCCGGGTGGCGGCG
GCGCCTCCAGCTGCTCGAGAAAGAGCTCCTCCAGCGGCCGGTCGCTGGTA
ATGCGGAAGAGGAACAGGTGATCCTGGCACTTCAGGCTGATCGATCGCAA
AGCGGGCAGACGCAGCAGCAGTTGCGCAAAGCGTCCATCGTCGCCCGGAT
GTTCCAGGCGGCAGTGCTCGTCCAGGCAAGCGTACACCTTCTCGCGGCAC
ATCTCGATCTCCGCCCGGCTCTTGATCCCGCGTATGTCCGGGTTGTACAG
TATGATGGCCTTCAAGCAGGACAGCTCGCGTCGGTCGAGATTCAGCCGCT
TCATCTTTACACTCAGCTCCGACAATATGCGGTCGAAGATGGCTGACACA
CCGGCTTTGATCGCACTGTTGCGATGGTACGAGAAGCTCTGGTTGAGGAA
CAGCTGCTGGGGCTGAAGGCCCGGTGATCGTCGCTCAAAGGAGCCATCGT
GGCCTAGTCCACCGCCCCCGCCGCCGGCACCGCCGTCATCCAGCGAAACG
ATGCTGCACCAGGCCACGTTCGCAATGAGCAGCTCGATCCAAGCGGCTTT
CAGCAGAATCACCTGGTCGTCCAGCGGCACCTGGGCAAAGTGCGGCATCA
TGCGCGCGTATTCGACCATCTGGAAGAGCTGTTTGTTGACCACTTGGCAC
AGGGCCGACACCGCACCCTTGTAGTCCGGCTGGACTGTGGAAAAGGGACC
CACGCGCAGGAACGTCAGTGCACGATCGCCGCATTGGGTCTCCGCTCG
MXO02301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4380-PA | 1527 | usp-RA | 745..1524 | 798..19 | 3825 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-RB | 3038 | CG4380-RB | 1667..2446 | 798..19 | 3855 | 99.6 | Minus |
| usp-RA | 2515 | CG4380-RA | 1144..1923 | 798..19 | 3855 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2039390..2040169 | 19..798 | 3855 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:19 has no hits.
MXO02301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:02 Download gff for
MXO02301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4380-PA | 745..1527 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:35 Download gff for
MXO02301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 1144..1923 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:32 Download gff for
MXO02301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 1144..1923 | 19..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:32 Download gff for
MXO02301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2039390..2040169 | 19..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:35 Download gff for
MXO02301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1933423..1934202 | 19..798 | 99 | | Plus |
MXO02301.5prime Sequence
854 bp (790 high quality bases) assembled on 2007-01-19
> MXO02301.5prime
CAGTCGACATGGACAACTGCGACCAGCACTCCAGCTTTCGGCTGAGCCAC
ATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGACAGCAACAA
CAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCATGCAGGCCA
TGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCTCCAACAAC
AACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCGGCTGGAGG
CTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCATCCGCTGA
GCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCAGTGGCAAG
CACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTTACCCCCAC
AGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAACTGCATCA
TAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACCAGAAGTGC
CTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGTCAACGCGG
CGCCCGCAATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGGCAGTAGCG
GTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAGGAGGAGGC
GGCGTTTCTGGCGGAATGGGCAGCGGCAACGGTTCCGATGACTTCATGAC
CAATAGCGTGTCCAGGGATTTCTCGATCGAGCGCATCATAGAGGCCGAGC
AGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCCTGCGCGTT
GGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTGTCGGCCCT
GTGC
MXO02301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4380-PA | 1527 | usp-RA | 390..846 | 398..854 | 2260 | 99.7 | Plus |
| CG4380-PA | 1527 | usp-RA | 1..385 | 9..393 | 1875 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-RB | 3038 | CG4380-RB | 923..1768 | 9..854 | 4140 | 99.3 | Plus |
| usp-RA | 2515 | CG4380-RA | 400..1245 | 9..854 | 4140 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2040068..2040913 | 854..9 | 4140 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 399..441 | 172..216 | 112 | 75.6 | Plus |
MXO02301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:03 Download gff for
MXO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4380-PA | 1..846 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:05 Download gff for
MXO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 396..1245 | 1..854 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:20 Download gff for
MXO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 396..1245 | 1..854 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:20 Download gff for
MXO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2040068..2040917 | 1..854 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:05 Download gff for
MXO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1934101..1934950 | 1..854 | 98 | | Minus |
