MXO02305.3prime Sequence
840 bp (797 high quality bases) assembled on 2007-01-19
> MXO02305.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCTTGGCCTTGCGCAGATAGGCTGCCT
GATCCTCGCCAGCGCCGATGAACTTGGAGCTCTCGCTGGCCTGCTGGGGG
CTGCTCGACTGCTTGACCACATTCTGGGCTGCCAGGGAGGCGGCCATGCG
CCGGCTCTTGTGACCACCGGGCGCCAGGTACGCCTTGTAGAAGAAGCGCG
CGAACAGGACAAAGTAGCTGGAGTACATGGCGATCGACAGATTGATGTTG
CGCTGCGAGATGTGACAGGAGGAGGTGCCGTGCGTCTTCAGGAAGCCATT
GGCCCACACGTTGATCGCACATCCGATGATCATCTGAGCCAGCTGCAGCG
ACGTGATGATCATCGAGATGAACCTGGGCGGATTGAAGCGGGCCGCCTTC
AGAGCATAGTAGCTGTACATCACCGAGTGCACGCAGTAGTTCATCACGAT
GAACCAGCGGGCAGAGCTGGTATATTCCGTATAGCTGAACCACGAGTAGA
TCAGCACGGTGATGTGGTGATACCAGTGCAAAAAGATGAGTGGCTGCTTG
CGGAGCACAATGAATATCGTGTCGCCCAGCTCCGGCAGTTTGCTGAGCAC
GAAGAGCCAGGTCCAGAAGCCGCACACGCGATCTTGCTCGATGTAGCTGG
GCACGCAGACGGAGTGGAAGAGTCCGTAGTGACGCAGCACGTGAATCAGC
TCCGGCGCCGTTCGGGCAGCACCCATGATGCTGAACATGGCCAGCAAGGT
GTTCCATATGATCAGCGGGCCGCGCAATTGGAATCTANGCCGATTTTGCA
TAAAGTGCTGACCACCGAAGATGACCAGCATGTAAATGCC
MXO02305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3971-PA | 951 | Baldspot-RA | 127..948 | 840..19 | 4066 | 99.7 | Minus |
CG3971-PB | 951 | Baldspot-RB | 127..948 | 840..19 | 4066 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-RB | 2445 | CG3971-RB | 387..1208 | 840..19 | 4084 | 99.8 | Minus |
Baldspot-RA | 2784 | CG3971-RA | 327..1148 | 840..19 | 4084 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16650078..16650587 | 19..528 | 2535 | 99.8 | Plus |
3L | 28110227 | 3L | 16651398..16651537 | 647..786 | 700 | 100 | Plus |
3L | 28110227 | 3L | 16651130..16651258 | 521..649 | 645 | 100 | Plus |
3L | 28110227 | 3L | 16659230..16659285 | 785..840 | 254 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:34 has no hits.
MXO02305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:05 Download gff for
MXO02305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3971-PB | 127..951 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:00 Download gff for
MXO02305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 327..1151 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:43 Download gff for
MXO02305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 327..1151 | 15..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:43 Download gff for
MXO02305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16650074..16650582 | 15..523 | 99 | <- | Plus |
3L | 16651133..16651255 | 524..646 | 100 | <- | Plus |
3L | 16651398..16651535 | 647..784 | 100 | <- | Plus |
3L | 16659230..16659285 | 785..840 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:00 Download gff for
MXO02305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16644498..16644635 | 647..784 | 100 | <- | Plus |
arm_3L | 16652330..16652385 | 785..840 | 96 | | Plus |
arm_3L | 16643174..16643682 | 15..523 | 99 | <- | Plus |
arm_3L | 16644233..16644355 | 524..646 | 100 | <- | Plus |
MXO02305.5prime Sequence
855 bp (704 high quality bases) assembled on 2007-01-19
> MXO02305.5prime
CAGTCGACATGATCAACATGGACATTACCGTTACGCCCAATTACTCGTAC
ATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGCAAATGGAT
GCTACAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTACATGCTGG
TCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGATTCCAATTG
CGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTCAGCATCAT
GGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCGTCACTACG
GACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAGATCGCGTG
TGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCATACTGCCCCCCCCGGC
CGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTTTTTGCACT
GGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCTATACGGAA
TATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGCGTGCACTC
GGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAATCCGCCCA
GGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGATGATCATC
GGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACGCACGGCAC
CTCCTCCGGTCACATCTCGCAGCGCAACATCAATCTGTCGATCGCCATGT
ACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGGCGTACCTG
GCGCCCGGTGGTCACAAGAGCCGGAGCATGGCCGCCTCCCTGGCACCCCA
GAATG
MXO02305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3971-PA | 951 | Baldspot-RA | 393..847 | 401..855 | 2200 | 99.3 | Plus |
CG3971-PB | 951 | Baldspot-RB | 393..847 | 401..855 | 2200 | 99.3 | Plus |
CG3971-PA | 951 | Baldspot-RA | 1..383 | 9..391 | 1840 | 99.2 | Plus |
CG3971-PB | 951 | Baldspot-RB | 1..383 | 9..391 | 1840 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-RB | 2445 | CG3971-RB | 261..1107 | 9..855 | 4055 | 98.6 | Plus |
Baldspot-RA | 2784 | CG3971-RA | 201..1047 | 9..855 | 4055 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16650179..16650587 | 855..447 | 1985 | 99 | Minus |
3L | 28110227 | 3L | 16659230..16659411 | 190..9 | 880 | 98.9 | Minus |
3L | 28110227 | 3L | 16651398..16651537 | 328..189 | 700 | 100 | Minus |
3L | 28110227 | 3L | 16651130..16651258 | 454..326 | 540 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:10 has no hits.
MXO02305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:06 Download gff for
MXO02305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3971-PB | 1..847 | 9..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:33 Download gff for
MXO02305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 194..1047 | 1..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:27 Download gff for
MXO02305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 194..1047 | 1..855 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:27 Download gff for
MXO02305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16650179..16650582 | 452..855 | 99 | <- | Minus |
3L | 16651133..16651255 | 329..451 | 94 | <- | Minus |
3L | 16651398..16651535 | 191..328 | 100 | <- | Minus |
3L | 16659230..16659418 | 1..190 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:33 Download gff for
MXO02305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16643279..16643682 | 452..855 | 99 | <- | Minus |
arm_3L | 16644233..16644355 | 329..451 | 94 | <- | Minus |
arm_3L | 16644498..16644635 | 191..328 | 100 | <- | Minus |
arm_3L | 16652330..16652518 | 1..190 | 96 | | Minus |