Clone MXO02305 Report

Search the DGRC for MXO02305

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:5
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptBaldspot-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02305.3prime Sequence

840 bp (797 high quality bases) assembled on 2007-01-19

> MXO02305.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCTTGGCCTTGCGCAGATAGGCTGCCT
GATCCTCGCCAGCGCCGATGAACTTGGAGCTCTCGCTGGCCTGCTGGGGG
CTGCTCGACTGCTTGACCACATTCTGGGCTGCCAGGGAGGCGGCCATGCG
CCGGCTCTTGTGACCACCGGGCGCCAGGTACGCCTTGTAGAAGAAGCGCG
CGAACAGGACAAAGTAGCTGGAGTACATGGCGATCGACAGATTGATGTTG
CGCTGCGAGATGTGACAGGAGGAGGTGCCGTGCGTCTTCAGGAAGCCATT
GGCCCACACGTTGATCGCACATCCGATGATCATCTGAGCCAGCTGCAGCG
ACGTGATGATCATCGAGATGAACCTGGGCGGATTGAAGCGGGCCGCCTTC
AGAGCATAGTAGCTGTACATCACCGAGTGCACGCAGTAGTTCATCACGAT
GAACCAGCGGGCAGAGCTGGTATATTCCGTATAGCTGAACCACGAGTAGA
TCAGCACGGTGATGTGGTGATACCAGTGCAAAAAGATGAGTGGCTGCTTG
CGGAGCACAATGAATATCGTGTCGCCCAGCTCCGGCAGTTTGCTGAGCAC
GAAGAGCCAGGTCCAGAAGCCGCACACGCGATCTTGCTCGATGTAGCTGG
GCACGCAGACGGAGTGGAAGAGTCCGTAGTGACGCAGCACGTGAATCAGC
TCCGGCGCCGTTCGGGCAGCACCCATGATGCTGAACATGGCCAGCAAGGT
GTTCCATATGATCAGCGGGCCGCGCAATTGGAATCTANGCCGATTTTGCA
TAAAGTGCTGACCACCGAAGATGACCAGCATGTAAATGCC

MXO02305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3971-PA 951 Baldspot-RA 127..948 840..19 4066 99.7 Minus
CG3971-PB 951 Baldspot-RB 127..948 840..19 4066 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-RB 2445 CG3971-RB 387..1208 840..19 4084 99.8 Minus
Baldspot-RA 2784 CG3971-RA 327..1148 840..19 4084 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16650078..16650587 19..528 2535 99.8 Plus
3L 28110227 3L 16651398..16651537 647..786 700 100 Plus
3L 28110227 3L 16651130..16651258 521..649 645 100 Plus
3L 28110227 3L 16659230..16659285 785..840 254 96.4 Plus
Blast to na_te.dros performed on 2014-11-28 22:20:34 has no hits.

MXO02305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:05 Download gff for MXO02305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3971-PB 127..951 15..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:00 Download gff for MXO02305.3prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 327..1151 15..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:43 Download gff for MXO02305.3prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 327..1151 15..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:43 Download gff for MXO02305.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16650074..16650582 15..523 99 <- Plus
3L 16651133..16651255 524..646 100 <- Plus
3L 16651398..16651535 647..784 100 <- Plus
3L 16659230..16659285 785..840 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:00 Download gff for MXO02305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16644498..16644635 647..784 100 <- Plus
arm_3L 16652330..16652385 785..840 96   Plus
arm_3L 16643174..16643682 15..523 99 <- Plus
arm_3L 16644233..16644355 524..646 100 <- Plus

MXO02305.5prime Sequence

855 bp (704 high quality bases) assembled on 2007-01-19

> MXO02305.5prime
CAGTCGACATGATCAACATGGACATTACCGTTACGCCCAATTACTCGTAC
ATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGCAAATGGAT
GCTACAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTACATGCTGG
TCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGATTCCAATTG
CGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTCAGCATCAT
GGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCGTCACTACG
GACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAGATCGCGTG
TGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCATACTGCCCCCCCCGGC
CGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTTTTTGCACT
GGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCTATACGGAA
TATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGCGTGCACTC
GGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAATCCGCCCA
GGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGATGATCATC
GGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACGCACGGCAC
CTCCTCCGGTCACATCTCGCAGCGCAACATCAATCTGTCGATCGCCATGT
ACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGGCGTACCTG
GCGCCCGGTGGTCACAAGAGCCGGAGCATGGCCGCCTCCCTGGCACCCCA
GAATG

MXO02305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3971-PA 951 Baldspot-RA 393..847 401..855 2200 99.3 Plus
CG3971-PB 951 Baldspot-RB 393..847 401..855 2200 99.3 Plus
CG3971-PA 951 Baldspot-RA 1..383 9..391 1840 99.2 Plus
CG3971-PB 951 Baldspot-RB 1..383 9..391 1840 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-RB 2445 CG3971-RB 261..1107 9..855 4055 98.6 Plus
Baldspot-RA 2784 CG3971-RA 201..1047 9..855 4055 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16650179..16650587 855..447 1985 99 Minus
3L 28110227 3L 16659230..16659411 190..9 880 98.9 Minus
3L 28110227 3L 16651398..16651537 328..189 700 100 Minus
3L 28110227 3L 16651130..16651258 454..326 540 94.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:46:10 has no hits.

MXO02305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:06 Download gff for MXO02305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3971-PB 1..847 9..855 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:33 Download gff for MXO02305.5prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 194..1047 1..855 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:27 Download gff for MXO02305.5prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 194..1047 1..855 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:27 Download gff for MXO02305.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16650179..16650582 452..855 99 <- Minus
3L 16651133..16651255 329..451 94 <- Minus
3L 16651398..16651535 191..328 100 <- Minus
3L 16659230..16659418 1..190 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:33 Download gff for MXO02305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16643279..16643682 452..855 99 <- Minus
arm_3L 16644233..16644355 329..451 94 <- Minus
arm_3L 16644498..16644635 191..328 100 <- Minus
arm_3L 16652330..16652518 1..190 96   Minus