Clone MXO02306 Report

Search the DGRC for MXO02306

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:6
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG6769-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02306.3prime Sequence

774 bp (737 high quality bases) assembled on 2007-01-19

> MXO02306.3prime
ATGGTCTAGAAAGCTTGCGATCAGAACCTGTGCACGATAGTGCTTCTGCA
GCTTATTGGCCTTGCAGCCGAGCTTCATCTGCCACTTGGACTGGACGCGC
TTCATCAGATGAATGTCGCGTGCCTTGCGGGCGGCGGACAGCTGCTGCGT
TTGCGTCCAGCCCAGAGCCCGGTACTCGCTGAGCACGCGGTGCAGTTTGC
GGTCGGACTTCTTGATGACGACGGCGCGTTCCGGACGAAGACGCTGCTTG
TAGTAGCGAAGCAGGGAGCGATGACCAATGACCGCGCCTGAGGGCAGCAC
CAGCTGATACTCATCGCCATCGAGCAGATCCGGCACCACCTCTTCGTCAA
TGTCCATGCCCTCATTATTGTCCGGATAACTGCTGCTGTAGTCGTAGTAT
TCGGCATACTCGGCCAGCGCCACACCCTCGTGCAGCATCTGGCAGTGGCC
CTTGTCGATCATGTGTTTGCGCACGGCGTCCAGGGAATAGAAGGTCTTGC
CGCGATCGTTGCAGAACAGGCAGATGAAGTAGTTGGCCACCTTCTCGCCC
AGGTAGTACAGAAGGCCCTCGATGTCCGTGCAGTACTCGGTGTCCGGAAT
GAAGAACGAGTGCGCCACGGACATGTGCTTTAGGTTCTCCACCAGATCCT
CGCTGGCATGTGTGCAGAACAGGCAGTCGCGCTCGGTCAGCGGATTCTCG
GGTATCTTGTCCCACTCATCGGAATCCACCTCCTCCTCTTCAATGTCCTC
GAAATCATCGTCGTCCTCGTCGAC

MXO02306.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PA 1230 CG6769-RA 472..1227 774..19 3780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RB 1543 CG6769-RB 634..1389 774..19 3780 100 Minus
CG6769-RA 1468 CG6769-RA 634..1389 774..19 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17861836..17862200 731..367 1825 100 Minus
X 23542271 X 17862274..17862621 366..19 1740 100 Minus
X 23542271 X 17861635..17861681 774..728 235 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:53:40 has no hits.

MXO02306.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:06 Download gff for MXO02306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-PA 472..1230 15..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:52 Download gff for MXO02306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 634..1392 15..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:05 Download gff for MXO02306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 634..1392 15..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:05 Download gff for MXO02306.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17861635..17861679 730..774 100 -> Minus
X 17861838..17862200 367..729 100 -> Minus
X 17862274..17862624 15..366 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:52 Download gff for MXO02306.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17755668..17755712 730..774 100 -> Minus
arm_X 17755871..17756233 367..729 100 -> Minus
arm_X 17756307..17756657 15..366 99   Minus

MXO02306.5prime Sequence

701 bp (700 high quality bases) assembled on 2007-01-19

> MXO02306.5prime
CAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCCGCTTCGCC
AGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCATCGCTACAA
TCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGAGGAGTTCC
AGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCACTCGAGGAG
CAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTCGCCAGCCA
GAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGAGCTGCTGG
CCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCGCCAGCACC
GCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGTTTTTCCATCCGGC
CCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGCGGAGCGGG
TGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACGACGATGAT
TTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGGGACAAGAT
ACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCACACATGCCA
GCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGCACTCGTTC
TTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTTCTGTACTA
C

MXO02306.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PA 1230 CG6769-RA 1..378 9..386 1890 100 Plus
CG6769-PA 1230 CG6769-RA 384..693 392..701 1550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RB 1543 CG6769-RB 163..855 9..701 3390 99.3 Plus
CG6769-RA 1468 CG6769-RA 163..855 9..701 3390 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17861164..17861681 9..526 2515 99 Plus
X 23542271 X 17861836..17862014 523..701 895 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:19:40 has no hits.

MXO02306.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:06 Download gff for MXO02306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-PA 1..693 9..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:41 Download gff for MXO02306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 153..855 1..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:17 Download gff for MXO02306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 153..855 1..701 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:17 Download gff for MXO02306.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17861154..17861679 1..524 98 -> Plus
X 17861838..17862014 525..701 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:41 Download gff for MXO02306.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17755871..17756047 525..701 100   Plus
arm_X 17755187..17755712 1..524 98 -> Plus