Clone MXO02307 Report

Search the DGRC for MXO02307

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:7
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptGABPI-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02307.5prime Sequence

722 bp (721 high quality bases) assembled on 2007-01-19

> MXO02307.5prime
CAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTCTTTCTGCA
GCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAACGGGAGTCT
CTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATCCCACATCC
TAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCACAAGACTT
GTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATGCTCATCGC
CTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAAGCGAATCT
CGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGCTGGGATTG
GCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACGCTGGTGGG
CTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCACGCGGACAA
ACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGATCATCATA
TTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAGAACTACGC
GTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTCCGCCAAGG
CACTGTCGCCCTTGAATCTTGTTTCTGCTCAATACGGAACCACGCCCAAG
GATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAGCAGGCAGA
GGCCCAGACCACACTCCAGATG

MXO02307.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17257-PB 1263 CG17257-RB 1..714 9..722 3570 100 Plus
CG17257-PA 1263 CG17257-RA 1..714 9..722 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1650 CG17257-RA 222..935 9..722 3570 100 Plus
GABPI-RB 1556 CG17257-RB 128..841 9..722 3570 100 Plus
GABPI-RD 1450 CG17257-RD 38..735 25..722 3490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031525 195..722 2640 100 Plus
2L 23513712 2L 3030760..3030947 9..196 940 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:19:46 has no hits.

MXO02307.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:07 Download gff for MXO02307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PA 1..714 9..722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:43 Download gff for MXO02307.5prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 124..844 1..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:21 Download gff for MXO02307.5prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 121..841 1..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:21 Download gff for MXO02307.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3031000..3031525 197..722 100   Plus
2L 3030753..3030947 1..196 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:43 Download gff for MXO02307.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3030753..3030947 1..196 97 -> Plus
arm_2L 3031000..3031525 197..722 100   Plus

MXO02307.3prime Sequence

722 bp (697 high quality bases) assembled on 2007-01-19

> MXO02307.3prime
ATGGTCTAGAAAGCTTGCCTTTAAGATGGCTCGCCAGTTGCTCCAGATTC
TGTTGCGTCCTGCGGCGTTGGAGGTGCGCTTGTATTCGTGCAAGGTGGAT
CCCTTCCACCACAAGTAAGCCTGTCTAGCGAGTATAAAGGCTATGTAGGA
AGAAATGAGCAGAGCGTAGCAAGCCACCACAAAGGAGATTCCGAGGTCGA
AGCCTTCGAACACCTCACTGCAGTCGTCGGGCAAAAGAACTGGATAACCA
AGCGGTCGCACCACCATAAACGGATGGCAAATGGAAGTGAGGGTCAAGTT
TGCGCCGAGCAGCAGAGCGATCTCCGACAGGGCCAGTCCAACAATGTACC
ACACGTAGTTCCGCTCGCCAATGCAGCAGTTTAGCCAGTAGCTGTGATGA
TCGCGCCTCTTCACGCAGGTTCCGCAGACGGGACAGTGGTATGCCCGCCT
TGGAGTAACCTTCCGGCAGATCTCGCAGATATTGGGCTGACCGTGCATCA
AGCCAGATCGCTCAGCAGTGTCCATATCCCCCACCTCGTCATCATCCAAA
CTCAGCACACTCTCCATCTGGAGTGTGGTCTGGGCCTCTGCCTGCTCCTC
GCCACTCGAAGCCTCGGCGATCCCAGGCAGCTCATCCTTGGGCGTGGTTC
CGTATTGAGCAGAAACAAGATTCAAGGGCGACAGTGCCTTGGCGGAATAG
AGGCAGTACAAAGCGGCACAGG

MXO02307.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17257-PB 1263 CG17257-RB 557..1260 722..19 3520 100 Minus
CG17257-PA 1263 CG17257-RA 557..1260 722..19 3520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RD 1450 CG17257-RD 578..1281 722..19 3520 100 Minus
GABPI-RC 1702 CG17257-RC 830..1533 722..19 3520 100 Minus
GABPI-RA 1650 CG17257-RA 778..1481 722..19 3520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3031368..3031893 722..197 2630 100 Minus
2L 23513712 2L 3031954..3032131 196..19 890 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:34:36 has no hits.

MXO02307.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:07 Download gff for MXO02307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17257-PA 557..1263 16..722 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:15 Download gff for MXO02307.3prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 687..1395 12..722 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:37 Download gff for MXO02307.3prime
Subject Subject Range Query Range Percent Splice Strand
GABPI-RA 778..1486 12..722 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:37 Download gff for MXO02307.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3031368..3031893 197..722 100 -> Minus
2L 3031954..3032136 12..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:15 Download gff for MXO02307.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3031368..3031893 197..722 100 -> Minus
arm_2L 3031954..3032136 12..196 97   Minus