Clone MXO02309 Report

Search the DGRC for MXO02309

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:9
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptImpE3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02309.3prime Sequence

848 bp (761 high quality bases) assembled on 2007-01-19

> MXO02309.3prime
ATGGTCTAGAAAGCTTGCAGGCAAAAACTGCATGCTGGGAATAAAAGTCA
ATGCCTTGGAAGTGGGGCTTTTGGGATTCCCCAGATCTTTGGCGATTCCC
TGCACGCGGGCCACCACGTCACTGCGCTGGATATCGCCCCGGTCCAACAT
CCTTTTAAATAGAGTATACAATTGCCTGGCCGCCGAAACCTGTGACAAGG
CATGCAGCTCCACCAGCAGATTCTCGGAATATCCCTCGTACTTGCTCAGA
CTCGCCGCCTTAGCATCGCGCTTTAGCAGATCGTAAACCAGCAGGAAATC
CACATAGGGCTTAGTGGGAGGAACTCTCTTTTTGCCTGCGATCGAGGCGG
TGCTCCATCGATCCATCGCGGACTCAGAACCGAAAGCGGCCCTTCCGTAG
TTATCGTCGTAGAGGCGCAAAAAGTTATCCAGTGACTCCACATCGTTGGT
AAAGTCGTAGCGCTCGCTTTGAATATCACGGATCAAAGACAAAGGCAGGG
TATCAAAGTCGCTATCATCTTTGATTTCTGCAAATAGATCGTTGCCCTCA
AGGGACTTTTCCGGCGGCGCAGTTGGTGCAAAAATTGCCGGACGGTGCGG
CACAGTGGGTGGCGATGTGGGTCTCTCGGTTGTGGATGATCTCTTCGGCG
TTTCCCACCAACTTGGCGGCTGCCACCAGCCCATGCCACCAGATCCAGAC
GCACCTGCTCCAATCGGTCGCCTTGTGGTAGTGGTTCTCATCCTCGTGGG
CAACGGTGTGGATGGGCGCGGATTTGCAGTGGTGGATTCCATACCTTCTT
CATCCGCACTGAAAGGAGGCTCCACTGTTGTGCTTGATAGTGGCTCGT

MXO02309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2723-PA 978 ImpE3-RA 146..971 848..23 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE3-RB 1094 CG2723-RB 211..1040 848..19 4135 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8028507..8029336 19..848 4135 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 22:20:41 has no hits.

MXO02309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:08 Download gff for MXO02309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2723-PA 146..978 15..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:02 Download gff for MXO02309.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 211..1051 6..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:47 Download gff for MXO02309.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 211..1051 6..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:47 Download gff for MXO02309.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8028496..8029336 6..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:02 Download gff for MXO02309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3854218..3855058 6..848 99   Plus

MXO02309.5prime Sequence

617 bp (332 high quality bases) assembled on 2007-01-19

> MXO02309.5prime
CAATCCACATGCGCAGTGGGCTAACGGTTCGTCCAATGCTGGTGGTGCTT
CTAGTGGGTCACCTAGTGGATCCAGTGGCGCCGGCTAACCTACTGACTAG
CTATCTGCCCGCCTCCATGCAGGCCTTGACATACTATATTGACCTGCTGC
AGTACGAGCCACTATCAAGCACAACAGTGGAGCCTCCTTTCAGTGCGGAT
GAAGAAGGTATGGAATCCACCACTGCAAATCCGCGCCCATCCACACCGTT
GCCCACGAGGATGAGAACCACTACCACAAGGCGACCGATTGGAGCAGGTG
CGTCTGGATCTGGTGGCATGGGCTGGTGGCAGCCGCCAAGTTGGTGGGAA
ACGCCGAAGAGATCGTCCACAACCGAGAGACCCACATCGCCCCCCACTGT
GCCGCACCGTCCGGCAATTTTTGCACCAACTGCGCCGACGGAAAAGTCCC
TTGAGGGCAACGATCTATTTGCAGAAATCAAAGATGATAGCGACTTTGAT
ACCCTGCCTTTGTCTTTGATCCGTGATATTCAAAGCGAGCGCTACGACTT
TACCAACGATGTGGAGTCACTGGATAACTTTTTGCGCATCTACAACGATA
ACTACAGAAGGTCCGCT

MXO02309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2723-PA 978 ImpE3-RA 1..609 9..617 2845 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE3-RB 1094 CG2723-RB 66..674 9..617 2925 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8028873..8029481 617..9 2925 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 21:33:13 has no hits.

MXO02309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:08 Download gff for MXO02309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2723-PA 1..609 9..617 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:55 Download gff for MXO02309.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 66..674 9..617 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:12 Download gff for MXO02309.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 66..674 9..617 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:12 Download gff for MXO02309.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8028873..8029481 9..617 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:55 Download gff for MXO02309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3854595..3855203 9..617 98   Minus