MXO02310.3prime Sequence
889 bp (769 high quality bases) assembled on 2007-01-19
> MXO02310.3prime
ATGGTCTAGAAAGCTTGCAAATTTATCCTGAAATATGAAGAGGTTATTGG
TCGCAGCCACGGCGATGATATTTTCTTCGGGGTGCCAGGCGGTGTGCAGG
ATCTTCTTGTTGAAATCTAGACAGTCCACGCTGATCTCATCCTTCTTTCG
TTTGCCGCCAGTGCAAACTTTCCGTGGCTTAAGCACCGTTTTCGGTTTGA
TGATGTCCCTGGACGCCTCTAGCGTCACATCCTTTTTCGAGTTGCGATCG
AAGACGCGGAAGAAGTTGTTGTAGCTTCCGGTCATTATTGAGCTGTCCTT
GCCGTTCCAACAGCACTCGAACTTGTCGAAGATGCAGTCATTCTCGTACA
GCGAGCACAGCTTGGCGCGCAGGTATTCATGAACCGGATAGGTCTCAATG
GGCTTTGTTTCCATATGCAGATCCCACACTTTGATGCTCAAGTAATCCCT
GGAGATCATGTAGCGACCCGAGTTGCTTAGCTTCACATCGCTGATGGAGC
TGATTATTTCGCTGAAAAAGCTGCGATTCGTTGGATTCTCGGGCTCCTCG
AACTGTTTGCTGTGCCGGTCGCATAGCGCCGCCGAACGCATATCACATAA
TCGTATTGTGCCCTTAGAGCTCGAGTAGACAAACACATTGCACTCGGTCG
GATGGAATTCGGCCGCGGTGATCACCTCTGTTAGCTCCTCCATGTTGGTT
GGCTTGATGTCGACAATGTTGTAGCTCTGGTTGACCACCTCCAAGTGCCA
CAGATTGATCCGCAGGTCGTCGGCCGACAAGAAGGTCTCCTGATCCGAAT
TAACGCTTATTGAATTGATGTGATAAGTGTGTGCATTGGCGAAGGTGCCC
CGTGGGGAAGCCTCCACCAGCAGTGGTATCTGCTTCACG
MXO02310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6235-PA | 1500 | tws-RA | 627..1497 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PF | 1500 | tws-RF | 627..1497 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PB | 1332 | tws-RB | 459..1329 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PD | 1332 | tws-RD | 459..1329 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PE | 1332 | tws-RE | 459..1329 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PC | 1332 | tws-RC | 459..1329 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PG | 1332 | tws-RG | 459..1329 | 889..19 | 4280 | 99.6 | Minus |
CG6235-PH | 1332 | tws-RH | 459..1329 | 889..19 | 4280 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tws-RI | 3856 | CG6235-RI | 965..1835 | 889..19 | 4310 | 99.7 | Minus |
tws-RH | 2300 | CG6235-RH | 924..1794 | 889..19 | 4310 | 99.7 | Minus |
tws-RG | 2400 | CG6235-RG | 1031..1901 | 889..19 | 4310 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10128627..10129134 | 382..889 | 2495 | 99.4 | Plus |
3R | 32079331 | 3R | 10128150..10128516 | 19..385 | 1835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:33 has no hits.
MXO02310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:09 Download gff for
MXO02310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6235-PH | 459..1332 | 18..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:10 Download gff for
MXO02310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tws-RC | 866..1740 | 13..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:26 Download gff for
MXO02310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tws-RG | 1031..1905 | 13..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:26 Download gff for
MXO02310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10128146..10128515 | 13..384 | 99 | <- | Plus |
3R | 10128630..10129134 | 385..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:10 Download gff for
MXO02310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5953868..5954237 | 13..384 | 99 | <- | Plus |
arm_3R | 5954352..5954856 | 385..889 | 99 | | Plus |
MXO02310.5prime Sequence
731 bp (689 high quality bases) assembled on 2007-01-19
> MXO02310.5prime
CAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGGAGCCGCCG
GACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCGCCAAGGAC
GTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCTCAACACGG
CCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAGAGGCGTCT
TGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTCACGGATGC
AGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCTGCTGGCCA
CTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCA
AAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCGACATTCCA
ATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGA
AGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTG
CTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGA
CAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACTGATCCGGG
ATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCA
CTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCACACACCTA
TCACATCAATTCAATAAGCGTTAATTCGGAT
MXO02310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6235-PA | 1500 | tws-RA | 1..723 | 9..731 | 3615 | 100 | Plus |
CG6235-PF | 1500 | tws-RF | 1..723 | 9..731 | 3615 | 100 | Plus |
CG6235-PB | 1332 | tws-RB | 8..555 | 184..731 | 2740 | 100 | Plus |
CG6235-PD | 1332 | tws-RD | 8..555 | 184..731 | 2740 | 100 | Plus |
CG6235-PE | 1332 | tws-RE | 8..555 | 184..731 | 2740 | 100 | Plus |
CG6235-PC | 1332 | tws-RC | 8..555 | 184..731 | 2740 | 100 | Plus |
CG6235-PG | 1332 | tws-RG | 8..555 | 184..731 | 2740 | 100 | Plus |
CG6235-PH | 1332 | tws-RH | 8..555 | 184..731 | 2740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tws-RI | 3856 | CG6235-RI | 339..1061 | 9..731 | 3615 | 100 | Plus |
tws-RF | 3664 | CG6235-RF | 147..869 | 9..731 | 3615 | 100 | Plus |
tws-RA | 2520 | CG6235-RA | 518..1240 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10129038..10129436 | 731..333 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 10134815..10134993 | 187..9 | 895 | 100 | Minus |
3R | 32079331 | 3R | 10129495..10129646 | 335..184 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:31 has no hits.
MXO02310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:10 Download gff for
MXO02310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6235-PF | 1..723 | 9..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:38 Download gff for
MXO02310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tws-RA | 509..1240 | 1..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:24 Download gff for
MXO02310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tws-RA | 509..1240 | 1..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:24 Download gff for
MXO02310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10129038..10129433 | 336..731 | 100 | <- | Minus |
3R | 10129495..10129646 | 184..335 | 100 | <- | Minus |
3R | 10134819..10135002 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:38 Download gff for
MXO02310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5954760..5955155 | 336..731 | 100 | <- | Minus |
arm_3R | 5955217..5955368 | 184..335 | 100 | <- | Minus |
arm_3R | 5960541..5960724 | 1..183 | 97 | | Minus |