Clone MXO02310 Report

Search the DGRC for MXO02310

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:10
Vector:pMK33-CTAP-BD
Associated Gene/Transcripttws-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02310.3prime Sequence

889 bp (769 high quality bases) assembled on 2007-01-19

> MXO02310.3prime
ATGGTCTAGAAAGCTTGCAAATTTATCCTGAAATATGAAGAGGTTATTGG
TCGCAGCCACGGCGATGATATTTTCTTCGGGGTGCCAGGCGGTGTGCAGG
ATCTTCTTGTTGAAATCTAGACAGTCCACGCTGATCTCATCCTTCTTTCG
TTTGCCGCCAGTGCAAACTTTCCGTGGCTTAAGCACCGTTTTCGGTTTGA
TGATGTCCCTGGACGCCTCTAGCGTCACATCCTTTTTCGAGTTGCGATCG
AAGACGCGGAAGAAGTTGTTGTAGCTTCCGGTCATTATTGAGCTGTCCTT
GCCGTTCCAACAGCACTCGAACTTGTCGAAGATGCAGTCATTCTCGTACA
GCGAGCACAGCTTGGCGCGCAGGTATTCATGAACCGGATAGGTCTCAATG
GGCTTTGTTTCCATATGCAGATCCCACACTTTGATGCTCAAGTAATCCCT
GGAGATCATGTAGCGACCCGAGTTGCTTAGCTTCACATCGCTGATGGAGC
TGATTATTTCGCTGAAAAAGCTGCGATTCGTTGGATTCTCGGGCTCCTCG
AACTGTTTGCTGTGCCGGTCGCATAGCGCCGCCGAACGCATATCACATAA
TCGTATTGTGCCCTTAGAGCTCGAGTAGACAAACACATTGCACTCGGTCG
GATGGAATTCGGCCGCGGTGATCACCTCTGTTAGCTCCTCCATGTTGGTT
GGCTTGATGTCGACAATGTTGTAGCTCTGGTTGACCACCTCCAAGTGCCA
CAGATTGATCCGCAGGTCGTCGGCCGACAAGAAGGTCTCCTGATCCGAAT
TAACGCTTATTGAATTGATGTGATAAGTGTGTGCATTGGCGAAGGTGCCC
CGTGGGGAAGCCTCCACCAGCAGTGGTATCTGCTTCACG

MXO02310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6235-PA 1500 tws-RA 627..1497 889..19 4280 99.6 Minus
CG6235-PF 1500 tws-RF 627..1497 889..19 4280 99.6 Minus
CG6235-PB 1332 tws-RB 459..1329 889..19 4280 99.6 Minus
CG6235-PD 1332 tws-RD 459..1329 889..19 4280 99.6 Minus
CG6235-PE 1332 tws-RE 459..1329 889..19 4280 99.6 Minus
CG6235-PC 1332 tws-RC 459..1329 889..19 4280 99.6 Minus
CG6235-PG 1332 tws-RG 459..1329 889..19 4280 99.6 Minus
CG6235-PH 1332 tws-RH 459..1329 889..19 4280 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
tws-RI 3856 CG6235-RI 965..1835 889..19 4310 99.7 Minus
tws-RH 2300 CG6235-RH 924..1794 889..19 4310 99.7 Minus
tws-RG 2400 CG6235-RG 1031..1901 889..19 4310 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10128627..10129134 382..889 2495 99.4 Plus
3R 32079331 3R 10128150..10128516 19..385 1835 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:31:33 has no hits.

MXO02310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:09 Download gff for MXO02310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6235-PH 459..1332 18..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:10 Download gff for MXO02310.3prime
Subject Subject Range Query Range Percent Splice Strand
tws-RC 866..1740 13..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:26 Download gff for MXO02310.3prime
Subject Subject Range Query Range Percent Splice Strand
tws-RG 1031..1905 13..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:26 Download gff for MXO02310.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10128146..10128515 13..384 99 <- Plus
3R 10128630..10129134 385..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:10 Download gff for MXO02310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5953868..5954237 13..384 99 <- Plus
arm_3R 5954352..5954856 385..889 99   Plus

MXO02310.5prime Sequence

731 bp (689 high quality bases) assembled on 2007-01-19

> MXO02310.5prime
CAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGGAGCCGCCG
GACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCGCCAAGGAC
GTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCTCAACACGG
CCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAGAGGCGTCT
TGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTCACGGATGC
AGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCTGCTGGCCA
CTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCA
AAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCGACATTCCA
ATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGA
AGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTG
CTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGA
CAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACTGATCCGGG
ATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCA
CTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCACACACCTA
TCACATCAATTCAATAAGCGTTAATTCGGAT

MXO02310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6235-PA 1500 tws-RA 1..723 9..731 3615 100 Plus
CG6235-PF 1500 tws-RF 1..723 9..731 3615 100 Plus
CG6235-PB 1332 tws-RB 8..555 184..731 2740 100 Plus
CG6235-PD 1332 tws-RD 8..555 184..731 2740 100 Plus
CG6235-PE 1332 tws-RE 8..555 184..731 2740 100 Plus
CG6235-PC 1332 tws-RC 8..555 184..731 2740 100 Plus
CG6235-PG 1332 tws-RG 8..555 184..731 2740 100 Plus
CG6235-PH 1332 tws-RH 8..555 184..731 2740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
tws-RI 3856 CG6235-RI 339..1061 9..731 3615 100 Plus
tws-RF 3664 CG6235-RF 147..869 9..731 3615 100 Plus
tws-RA 2520 CG6235-RA 518..1240 9..731 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10129038..10129436 731..333 1995 100 Minus
3R 32079331 3R 10134815..10134993 187..9 895 100 Minus
3R 32079331 3R 10129495..10129646 335..184 760 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:31:31 has no hits.

MXO02310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:10 Download gff for MXO02310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6235-PF 1..723 9..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:38 Download gff for MXO02310.5prime
Subject Subject Range Query Range Percent Splice Strand
tws-RA 509..1240 1..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:24 Download gff for MXO02310.5prime
Subject Subject Range Query Range Percent Splice Strand
tws-RA 509..1240 1..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:24 Download gff for MXO02310.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10129038..10129433 336..731 100 <- Minus
3R 10129495..10129646 184..335 100 <- Minus
3R 10134819..10135002 1..183 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:38 Download gff for MXO02310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5954760..5955155 336..731 100 <- Minus
arm_3R 5955217..5955368 184..335 100 <- Minus
arm_3R 5960541..5960724 1..183 97   Minus