MXO02311.3prime Sequence
925 bp (711 high quality bases) assembled on 2007-01-19
> MXO02311.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCATCTTATACCCCTCAGTATACCCAT
AGCTGTCAGCCAGTTCATAATCCTTGGAATAGCACTCAAAGAATTCGCCC
AAAACTTTGCCGTGTGGCAGTTCCCATGTGGCAGAACCACCGTATTTCGG
AGGCAAAGCCTTCGCCTCAATATGGGAGATCAGGGACTTGTAGTCCTTGC
CATGGAAGAAGATCCTCTTGCGCAGCTTTTCGCGAATGAATGGCTTGAAT
ACGGCAAAGAGCATATTGAATATATATGAATTATTCACTATGTGAACTGC
TTTCAAACGCATGCAGATGCATTCTTGAATGTAATCCAGCAACATGGCGG
CAAATGACGGTGTAAATTGTGTAATGTGGCTAAGTGGCAGCCCTTCCATA
TCGATAATGACAACTGAGCCGCAAATTTGTGAGTAGGGCTCCACCATAGA
ACCCAGTACGGTCAATTGAATGCCGCGGAATAGATCCACCAAGGGCACTT
GCGATGGCTTCCATTTTTTGCCAGCTTCCAGCACCAAAAGCCGACGGCCG
TGTTGATCTCTTTGGGGCAGCAAATTCAGAATATTTGCCTCGAAAACGTT
TCTCAACTTGCTGGGGATTATGTTCTCGCAAGCGGCTCCATACTTCAATT
TCATGTGATAAAAGTTCTTGAGCCTTTTCAAGGCACTTTCTGGATAGTAA
TGGGTGGGACGCANGAACATCATCATATACTCATCATCCAATGGCAGGTT
CAGGTACTTTTCATTTTGAATGAGTTCCCTGAGGTCCTTGATGGCCTGCT
CCTTGACGCCGGGCACTTCCCGCAACTCATCCTGTGCCTTCTTCAGTGCC
CATTCCGGCGCTTGTTCCTTCTCCATGCGGATCTGTGCCGAGCCCAGATC
GATGTAGGGCAACTTGTGCTCATCG
MXO02311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5973-PA | 936 | CG5973-RA | 27..933 | 925..19 | 4491 | 99.7 | Minus |
| CG5973-PB | 936 | CG5973-RB | 27..933 | 925..19 | 4491 | 99.7 | Minus |
| CG5973-PC | 936 | CG5973-RC | 27..933 | 925..19 | 4491 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5973-RF | 1463 | CG5973-RF | 258..1164 | 925..19 | 4509 | 99.8 | Minus |
| CG5973-RE | 2204 | CG5973-RE | 386..1292 | 925..19 | 4509 | 99.8 | Minus |
| CG5973-RG | 1313 | CG5973-RG | 108..1014 | 925..19 | 4509 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7444463..7444643 | 394..214 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 7443672..7443832 | 925..765 | 790 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7444059..7444213 | 673..519 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 7444708..7444859 | 214..63 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 7444273..7444399 | 518..392 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 7443894..7443985 | 764..673 | 449 | 98.9 | Minus |
| 2L | 23513712 | 2L | 7444927..7444970 | 62..19 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:11 has no hits.
MXO02311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:10 Download gff for
MXO02311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-PC | 27..936 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:24 Download gff for
MXO02311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RD | 1725..2634 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:31 Download gff for
MXO02311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RG | 108..1017 | 15..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:31 Download gff for
MXO02311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7443672..7443832 | 765..925 | 99 | -> | Minus |
| 2L | 7443894..7443985 | 673..764 | 98 | -> | Minus |
| 2L | 7444060..7444213 | 519..672 | 100 | -> | Minus |
| 2L | 7444273..7444398 | 393..518 | 100 | -> | Minus |
| 2L | 7444465..7444643 | 214..392 | 100 | -> | Minus |
| 2L | 7444709..7444859 | 63..213 | 100 | -> | Minus |
| 2L | 7444927..7444973 | 15..62 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:24 Download gff for
MXO02311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7443672..7443832 | 765..925 | 99 | -> | Minus |
| arm_2L | 7443894..7443985 | 673..764 | 98 | -> | Minus |
| arm_2L | 7444060..7444213 | 519..672 | 100 | -> | Minus |
| arm_2L | 7444273..7444398 | 393..518 | 100 | -> | Minus |
| arm_2L | 7444465..7444643 | 214..392 | 100 | -> | Minus |
| arm_2L | 7444709..7444859 | 63..213 | 100 | -> | Minus |
| arm_2L | 7444927..7444973 | 15..62 | 95 | | Minus |
MXO02311.5prime Sequence
829 bp (773 high quality bases) assembled on 2007-01-19
> MXO02311.5prime
CAGTCGACATGGGCAAGGCAGAGTGCATTAGCTACGATGAGCACAAGTTG
CCCTACATCGATCTGGGCTCGGCACAGATCCGCATGGAGAAGGAACAAGC
GCCGGAATGGGCACTGAAGAAGGCACAGGATGAGTTGCGGGAAGTGCCCG
GCGTCAAGGAGCAGGCCATCAAGGAACTCAGGGAACTCATTCAAAATGAA
AAGTACCTGAACCTGCCATTGGATGATGAGTATATGATGATGTTCCTGCG
TCCCACCCATTACTATCCAGAAAGTGCCTTGAAAAGGCTCAAGAACTTTT
ATCACATGAAATTGAAGTATGGAGCCGCTTGCGAGAACATAATCCCCAGC
AAGTTGAGAAACGTTTTCGAGGCAAATATTCTGAATTTGCTGCCCCAAAG
AGATCAACACGGCCGTCGGCTTTTGGTGCTGGAAGCTGGCAAAAAATGGA
AGCCATCGCAAGTGCCCTTGGTGGATCTATTCCGCGGCATTCAATTGACC
GTACTGGGTTCTATGGTGGAGCCCTACTCACAAATTTGCGGCTCAGTTGT
CATTATCGATATGGAAGGGCTGCCACTTAGCCACATTACACAATTTACAC
CGTCATTTGCCGCCATGTTGCTGGATTACATTCAAGAATGCATCTGCATG
CGTTTGAAAGCAGTTCACATAGTGAATAATTCATATATATTCAATATGCT
CTTTGCCGTATTCAAGCCATTCATTCGCGAAAAGCTGCGCAAGAGGATCT
TCTTCCATGGCAAGGACTACAAGTCCCTGATCTCCCATATTGAGGCGAAG
GCTTTGCCTCCGAAATACGGTGGTTCTGC
MXO02311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5973-PA | 936 | CG5973-RA | 1..821 | 9..829 | 4105 | 100 | Plus |
| CG5973-PB | 936 | CG5973-RB | 1..821 | 9..829 | 4105 | 100 | Plus |
| CG5973-PC | 936 | CG5973-RC | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5973-RF | 1463 | CG5973-RF | 231..1052 | 8..829 | 4110 | 100 | Plus |
| CG5973-RE | 2204 | CG5973-RE | 359..1180 | 8..829 | 4110 | 100 | Plus |
| CG5973-RG | 1313 | CG5973-RG | 81..902 | 8..829 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7443645..7443832 | 8..195 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 7444463..7444643 | 566..746 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 7444059..7444213 | 287..441 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 7444273..7444399 | 442..568 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 7443894..7443985 | 196..287 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 7444708..7444791 | 746..829 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:29 has no hits.
MXO02311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:11 Download gff for
MXO02311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-PC | 1..821 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:44 Download gff for
MXO02311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RD | 1693..2519 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:37 Download gff for
MXO02311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RG | 76..902 | 1..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:37 Download gff for
MXO02311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7443640..7443832 | 1..195 | 97 | -> | Plus |
| 2L | 7443894..7443985 | 196..287 | 100 | -> | Plus |
| 2L | 7444060..7444213 | 288..441 | 100 | -> | Plus |
| 2L | 7444273..7444398 | 442..567 | 100 | -> | Plus |
| 2L | 7444465..7444643 | 568..746 | 100 | -> | Plus |
| 2L | 7444709..7444791 | 747..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:44 Download gff for
MXO02311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7443640..7443832 | 1..195 | 97 | -> | Plus |
| arm_2L | 7443894..7443985 | 196..287 | 100 | -> | Plus |
| arm_2L | 7444060..7444213 | 288..441 | 100 | -> | Plus |
| arm_2L | 7444273..7444398 | 442..567 | 100 | -> | Plus |
| arm_2L | 7444465..7444643 | 568..746 | 100 | -> | Plus |
| arm_2L | 7444709..7444791 | 747..829 | 100 | | Plus |
