MXO02312.3prime Sequence
740 bp (671 high quality bases) assembled on 2007-01-19
> MXO02312.3prime
ATGGTCTAGAAAGCTTGCGAACTGCTGATAGTTGTTGCTATTGTTCTTGT
TTTGATGGTAATTACTCGACGTGTTGATATTGTAATAATTGTTTTGAGCA
CTACTTTGTTGTTTGTTGTATTTACCATAACCGTAGTCATATCCATTATA
GTAGCCGCCGGCATAGTAGTCGCCATAACCACCGGCACCATATCCGCCGT
AGCCGCCGCCATAGCCGCCGTATGATCCCTGTCCGTCCCACTGGTTGTTG
TAGCCACCTCGTCCTCCGTAGCCACCGCGTCCGCCGCGCATACCACCGCG
TGGTCCACCACGCATACCGCCCATCATCTGGTTCTCCGGCTTGGGCGTCG
CACGCTTAACATCGACCTCCTTGCCGGCGATCTTCTGCTTGGGCGTCTTC
AGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGATGAAGCAGAATCC
TTTGCGCTGCGACTTTTGCTTGTCGAATGGCATCTCCACCTCGACGATAT
TGCCGAACTGTCCAAAGTAGGTCTTAATCTCCTCATCGCTGATCTCTGTG
GTGAGGCCGCCGACAAAGATCTTGCCGTGCCTGGCCTTGGCCTTCTTGGG
ATCGACCTTCTTGCTGTTGATTATGTGCTCATCCGCGGCGCTGACTTTGT
CAATGGCCTCGGTGTTTGTAAACACGATGAAGGCGAATCCTCGGGACCGA
CCGGTCTGGGGATCTGTCTTGACATTGATGCTCTCGATCT
MXO02312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16901-PA | 966 | sqd-RA | 242..963 | 740..19 | 3585 | 99.8 | Minus |
| CG16901-PC | 927 | sqd-RC | 242..857 | 740..125 | 3080 | 100 | Minus |
| CG16901-PB | 1035 | sqd-RB | 242..856 | 740..126 | 3075 | 100 | Minus |
| CG16901-PD | 537 | sqd-RD | 1..358 | 483..126 | 1790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RA | 5551 | CG16901-RA | 356..1077 | 740..19 | 3595 | 99.9 | Minus |
| sqd-RC | 2239 | CG16901-RC | 352..967 | 740..125 | 3080 | 100 | Minus |
| sqd-RE | 2844 | CG16901-RE | 627..1242 | 740..125 | 3080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642511..13642755 | 254..498 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 13642829..13643070 | 499..740 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 13642192..13642428 | 19..255 | 1170 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:41 has no hits.
MXO02312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:11 Download gff for
MXO02312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16901-PA | 242..966 | 15..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:20 Download gff for
MXO02312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 356..1081 | 14..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:06 Download gff for
MXO02312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 356..1081 | 14..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:06 Download gff for
MXO02312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13642188..13642427 | 14..254 | 98 | <- | Plus |
| 3R | 13642512..13642755 | 255..498 | 100 | <- | Plus |
| 3R | 13642829..13643070 | 499..740 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:20 Download gff for
MXO02312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9467910..9468149 | 14..254 | 98 | <- | Plus |
| arm_3R | 9468234..9468477 | 255..498 | 100 | <- | Plus |
| arm_3R | 9468551..9468792 | 499..740 | 100 | | Plus |
MXO02312.5prime Sequence
871 bp (798 high quality bases) assembled on 2007-01-19
> MXO02312.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
AAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCTGGAAA
MXO02312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:45:25 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:25:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 19:25:41 has no hits.
Blast to na_te.dros performed on 2014-11-28 19:25:42 has no hits.
MXO02312.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:57:41 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:57:41 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:40 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:40 has no hits.
