MXO02314.3prime Sequence
766 bp (720 high quality bases) assembled on 2007-01-19
> MXO02314.3prime
ATGGTCTAGAAAGCTTGCCAAGTCGTCGCCCAGGCGATGGATCTCGTCCA
GCATAAAGTCCACATCCGCCTCGTTGACGGCCGCCGACGAGATAATCGAG
CGGAAGAAGTTGGGCCGGCGATCGTCGGGCTGGTAGCCCACCATCAGCGT
TCCCTTCTGCATCATGCGGCCCTTGATGATGGGGCAGATCTTTCCCAGCT
CCACCTCCTTCTTGGCATCGTGTGGCACTCCTCTCAGTCGCTTGGGCACA
TACCAGAAGGAGACGTTGACGCACTCCGGTTCAAGGATCAGATGGAAGCG
GTCGGACTGCTCGCGAATGCGCTTCAACTGGTACTGGACCAGCTCCATGA
GCCGGTCCTGCTGCTGCTCGAAGCCCTCGGTGCCCTTGGCCCGCCACTGG
AGCCACAGCTTGAAGATGTCGTTGTGGCGGCCGCACTGGATCACCTTGTC
GCCGGTGTCGTAGCTAATGTCATACTGCTTGTCGGTCATGAAGAGATACT
CCGCCGACATCTGATTGCAGCTGATGAGCAGGCCATCCTCCTTGAAATGG
ATCGTGGAGCACTGGAGCAGGGCTCCCATGAGCTTGTGGGGATTCCAGGT
GACCGAATCGGCACGCTCAACACCAGTAAATCTGGGATGACGATGCTTAC
GCGACATCAACAATCCACCGCCCCAAGCAGCATCGATGTGCATCCAGCAG
TTGTACTTCTGGCAGATATCCGCCATCGTGTTGATATCATCGAAGGCACC
CAGCACAGTGGTGCCG
MXO02314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14994-PB | 1533 | Gad1-RB | 783..1530 | 766..19 | 3690 | 99.7 | Minus |
CG14994-PA | 1533 | Gad1-RA | 783..1530 | 766..19 | 3690 | 99.7 | Minus |
CG14994-PC | 1533 | Gad1-RC | 783..1530 | 766..19 | 3690 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-RD | 3017 | CG14994-RD | 979..1726 | 766..19 | 3710 | 99.7 | Minus |
Gad1-RC | 3151 | CG14994-RC | 1113..1860 | 766..19 | 3710 | 99.7 | Minus |
Gad1-RA | 3050 | CG14994-RA | 1012..1759 | 766..19 | 3710 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4075596..4075940 | 190..534 | 1725 | 100 | Plus |
3L | 28110227 | 3L | 4075368..4075540 | 19..191 | 850 | 99.4 | Plus |
3L | 28110227 | 3L | 4078925..4079010 | 681..766 | 415 | 98.8 | Plus |
3L | 28110227 | 3L | 4076798..4076878 | 534..614 | 405 | 100 | Plus |
3L | 28110227 | 3L | 4078750..4078817 | 614..681 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:22 has no hits.
MXO02314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:12 Download gff for
MXO02314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14994-PC | 783..1533 | 15..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:31 Download gff for
MXO02314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 1012..1763 | 14..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:14 Download gff for
MXO02314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 1012..1763 | 14..766 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:14 Download gff for
MXO02314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4078750..4078817 | 614..681 | 100 | <- | Plus |
3L | 4078926..4079010 | 682..766 | 98 | | Plus |
3L | 4075364..4075538 | 14..189 | 98 | <- | Plus |
3L | 4075596..4075940 | 190..534 | 100 | <- | Plus |
3L | 4076799..4076877 | 535..613 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:31 Download gff for
MXO02314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4075364..4075538 | 14..189 | 98 | <- | Plus |
arm_3L | 4075596..4075940 | 190..534 | 100 | <- | Plus |
arm_3L | 4076799..4076877 | 535..613 | 100 | <- | Plus |
arm_3L | 4078750..4078817 | 614..681 | 100 | <- | Plus |
arm_3L | 4078926..4079010 | 682..766 | 98 | | Plus |
MXO02314.5prime Sequence
408 bp (383 high quality bases) assembled on 2007-01-19
> MXO02314.5prime
CAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCGAGAGGACG
GGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACCGCTGGACC
GGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCTGGACTTTG
TGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCCACCATCCC
GAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGCGCCTTGCC
ACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTACCAAGTTA
AGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTCTGGACCTG
ATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACCAACATGTT
CACCTAAC
MXO02314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14994-PB | 1533 | Gad1-RB | 1..398 | 9..406 | 1990 | 100 | Plus |
CG14994-PA | 1533 | Gad1-RA | 1..398 | 9..406 | 1990 | 100 | Plus |
CG14994-PC | 1533 | Gad1-RC | 1..398 | 9..406 | 1990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gad1-RD | 3017 | CG14994-RD | 197..594 | 9..406 | 1990 | 100 | Plus |
Gad1-RC | 3151 | CG14994-RC | 331..728 | 9..406 | 1990 | 100 | Plus |
Gad1-RA | 3050 | CG14994-RA | 230..627 | 9..406 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4082402..4082640 | 307..69 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 4079395..4079495 | 406..306 | 505 | 100 | Minus |
3L | 28110227 | 3L | 4084730..4084790 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:12 has no hits.
MXO02314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:13 Download gff for
MXO02314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14994-PC | 1..399 | 9..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:23 Download gff for
MXO02314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 222..628 | 2..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:53 Download gff for
MXO02314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gad1-RA | 222..628 | 2..408 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:53 Download gff for
MXO02314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4079394..4079494 | 307..408 | 99 | <- | Minus |
3L | 4082403..4082639 | 70..306 | 100 | <- | Minus |
3L | 4084730..4084795 | 2..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:23 Download gff for
MXO02314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4079394..4079494 | 307..408 | 99 | <- | Minus |
arm_3L | 4082403..4082639 | 70..306 | 100 | <- | Minus |
arm_3L | 4084730..4084795 | 2..69 | 94 | | Minus |