Clone MXO02314 Report

Search the DGRC for MXO02314

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:14
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptGad1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02314.3prime Sequence

766 bp (720 high quality bases) assembled on 2007-01-19

> MXO02314.3prime
ATGGTCTAGAAAGCTTGCCAAGTCGTCGCCCAGGCGATGGATCTCGTCCA
GCATAAAGTCCACATCCGCCTCGTTGACGGCCGCCGACGAGATAATCGAG
CGGAAGAAGTTGGGCCGGCGATCGTCGGGCTGGTAGCCCACCATCAGCGT
TCCCTTCTGCATCATGCGGCCCTTGATGATGGGGCAGATCTTTCCCAGCT
CCACCTCCTTCTTGGCATCGTGTGGCACTCCTCTCAGTCGCTTGGGCACA
TACCAGAAGGAGACGTTGACGCACTCCGGTTCAAGGATCAGATGGAAGCG
GTCGGACTGCTCGCGAATGCGCTTCAACTGGTACTGGACCAGCTCCATGA
GCCGGTCCTGCTGCTGCTCGAAGCCCTCGGTGCCCTTGGCCCGCCACTGG
AGCCACAGCTTGAAGATGTCGTTGTGGCGGCCGCACTGGATCACCTTGTC
GCCGGTGTCGTAGCTAATGTCATACTGCTTGTCGGTCATGAAGAGATACT
CCGCCGACATCTGATTGCAGCTGATGAGCAGGCCATCCTCCTTGAAATGG
ATCGTGGAGCACTGGAGCAGGGCTCCCATGAGCTTGTGGGGATTCCAGGT
GACCGAATCGGCACGCTCAACACCAGTAAATCTGGGATGACGATGCTTAC
GCGACATCAACAATCCACCGCCCCAAGCAGCATCGATGTGCATCCAGCAG
TTGTACTTCTGGCAGATATCCGCCATCGTGTTGATATCATCGAAGGCACC
CAGCACAGTGGTGCCG

MXO02314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14994-PB 1533 Gad1-RB 783..1530 766..19 3690 99.7 Minus
CG14994-PA 1533 Gad1-RA 783..1530 766..19 3690 99.7 Minus
CG14994-PC 1533 Gad1-RC 783..1530 766..19 3690 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 3017 CG14994-RD 979..1726 766..19 3710 99.7 Minus
Gad1-RC 3151 CG14994-RC 1113..1860 766..19 3710 99.7 Minus
Gad1-RA 3050 CG14994-RA 1012..1759 766..19 3710 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4075596..4075940 190..534 1725 100 Plus
3L 28110227 3L 4075368..4075540 19..191 850 99.4 Plus
3L 28110227 3L 4078925..4079010 681..766 415 98.8 Plus
3L 28110227 3L 4076798..4076878 534..614 405 100 Plus
3L 28110227 3L 4078750..4078817 614..681 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:46:22 has no hits.

MXO02314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:12 Download gff for MXO02314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14994-PC 783..1533 15..766 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:31 Download gff for MXO02314.3prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 1012..1763 14..766 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:14 Download gff for MXO02314.3prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 1012..1763 14..766 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:14 Download gff for MXO02314.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4078750..4078817 614..681 100 <- Plus
3L 4078926..4079010 682..766 98   Plus
3L 4075364..4075538 14..189 98 <- Plus
3L 4075596..4075940 190..534 100 <- Plus
3L 4076799..4076877 535..613 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:31 Download gff for MXO02314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4075364..4075538 14..189 98 <- Plus
arm_3L 4075596..4075940 190..534 100 <- Plus
arm_3L 4076799..4076877 535..613 100 <- Plus
arm_3L 4078750..4078817 614..681 100 <- Plus
arm_3L 4078926..4079010 682..766 98   Plus

MXO02314.5prime Sequence

408 bp (383 high quality bases) assembled on 2007-01-19

> MXO02314.5prime
CAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCGAGAGGACG
GGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACCGCTGGACC
GGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCTGGACTTTG
TGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCCACCATCCC
GAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGCGCCTTGCC
ACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTACCAAGTTA
AGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTCTGGACCTG
ATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACCAACATGTT
CACCTAAC

MXO02314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14994-PB 1533 Gad1-RB 1..398 9..406 1990 100 Plus
CG14994-PA 1533 Gad1-RA 1..398 9..406 1990 100 Plus
CG14994-PC 1533 Gad1-RC 1..398 9..406 1990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 3017 CG14994-RD 197..594 9..406 1990 100 Plus
Gad1-RC 3151 CG14994-RC 331..728 9..406 1990 100 Plus
Gad1-RA 3050 CG14994-RA 230..627 9..406 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4082402..4082640 307..69 1195 100 Minus
3L 28110227 3L 4079395..4079495 406..306 505 100 Minus
3L 28110227 3L 4084730..4084790 69..9 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:16:12 has no hits.

MXO02314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:13 Download gff for MXO02314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14994-PC 1..399 9..408 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:23 Download gff for MXO02314.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 222..628 2..408 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:53 Download gff for MXO02314.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 222..628 2..408 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:53 Download gff for MXO02314.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4079394..4079494 307..408 99 <- Minus
3L 4082403..4082639 70..306 100 <- Minus
3L 4084730..4084795 2..69 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:23 Download gff for MXO02314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4079394..4079494 307..408 99 <- Minus
arm_3L 4082403..4082639 70..306 100 <- Minus
arm_3L 4084730..4084795 2..69 94   Minus