MXO02315.3prime Sequence
682 bp (604 high quality bases) assembled on 2007-01-19
> MXO02315.3prime
ATGGTCTAGAAAGCTTGCTTGTTTCCTCCAATCGCGTCCAGAGCTGCGCC
TTTGATGCTTAACAGATCCCCCATTGCTGCTACCGCCACTTCCGTTGACT
ACGCCAGATACGCCTCCTCCGTTGCTGTGATCCTGGGCGGGATATCGGGT
TACAACGTCGTCAATTAGCTCCAGAATGCCAATCTTGAACTTGCGACGTT
GCTGTGGAGTGAGAGTCGCCAGATCTGGGAGAATGCTGCGGAAGAACTCC
ATGTCCGCCACTTCCGACGAACTCAGTCCGCCGTAAATACTTCCTGCATT
CGTCATCGTGCTGGTGGCCTCGCATTCCGTCTTGATTCTTTTCGTGCTCC
CCGGTTCGTAGGATGCTGGGTGATGATCCATGGACAATGTCAAAGGATGT
GGATGCGAGTGCGGATGGTAGTGCAGAGGCGGTGGTGTGCCATGTCCACC
ATCGCTGTAGATGAGTTGCGAGCCCGTCTCGGCCAGCTGCACATCTGGAA
TGAAGTTTTTCATGCTATCCGCACTAGCGGTATCGCTTCTGGCCGGTGAA
TTGCCTCCGCCTCCTTGAAGGGCAGAACTGCGAGTGGGCGTGGACGAAGT
ACGATTCCTACCCAGGGTGTTGGTAACCGCGGGATCAAAGGCGTCGATGG
TCTCCTCATCGTCCTTCTCCGATATCGAGTAC
MXO02315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-PA | 1308 | CG3838-RA | 642..1305 | 682..19 | 3295 | 99.8 | Minus |
CG3838-PB | 1308 | CG3838-RB | 642..1305 | 682..19 | 3295 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 3091 | CG3838-RB | 1818..2481 | 682..19 | 3305 | 99.8 | Minus |
CG3838-RA | 2256 | CG3838-RA | 983..1646 | 682..19 | 3305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9572299..9572962 | 682..19 | 3305 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:01 has no hits.
MXO02315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:13 Download gff for
MXO02315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-PB | 642..1308 | 15..682 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:03 Download gff for
MXO02315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 983..1651 | 14..682 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:14 Download gff for
MXO02315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 983..1651 | 14..682 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:14 Download gff for
MXO02315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9572299..9572967 | 14..682 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:03 Download gff for
MXO02315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9572299..9572967 | 14..682 | 99 | | Minus |
MXO02315.5prime Sequence
785 bp (707 high quality bases) assembled on 2007-01-19
> MXO02315.5prime
CAGTCGACATGACCACCTCAACCCGCACCAGCAGCAACAACCACAGCAGC
GAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAACCACCACAG
TCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGGATCCACCA
ACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCGTCAACCTG
GTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAGTACCGCAA
CAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGAGACAAGAG
AAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGGCCTGCCTA
TCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCACAAGCCATA
CTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAAGTCCAGCC
GTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACCAGATGTCC
CAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCACTCCATGC
GACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAATAATAATA
ATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGGAGATGAAG
TACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCCTTTGATCC
CGCGGTTACCAACACCCTGAGTATGAATCGTACTTCGTCCACGCCCACTC
GCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCA
MXO02315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-PA | 1308 | CG3838-RA | 1..777 | 9..785 | 3835 | 99.7 | Plus |
CG3838-PB | 1308 | CG3838-RB | 1..777 | 9..785 | 3835 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 3091 | CG3838-RB | 1177..1953 | 9..785 | 3855 | 99.7 | Plus |
CG3838-RA | 2256 | CG3838-RA | 342..1118 | 9..785 | 3855 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9571955..9572434 | 306..785 | 2385 | 99.8 | Plus |
2L | 23513712 | 2L | 9571509..9571754 | 9..254 | 1215 | 99.6 | Plus |
2L | 23513712 | 2L | 9571838..9571894 | 250..306 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 27..263 | 175 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6898 | 26..129 | 144 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2431 | 8..99 | 134 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2527 | 2..99 | 131 | 62.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1141 | 16..100 | 126 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2887 | 26..99 | 125 | 66.3 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..177 | 5..51 | 118 | 72.3 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9207 | 5..51 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7376..7468 | 5..102 | 117 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1585 | 4..55 | 113 | 71.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7947..7985 | 11..50 | 107 | 77.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9391..9429 | 11..50 | 107 | 77.5 | Plus |
MXO02315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:14 Download gff for
MXO02315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-PB | 1..776 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:44 Download gff for
MXO02315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 334..1117 | 1..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:23 Download gff for
MXO02315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 334..1117 | 1..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:23 Download gff for
MXO02315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9571501..9571753 | 1..253 | 98 | -> | Plus |
2L | 9571842..9571894 | 254..306 | 100 | -> | Plus |
2L | 9571956..9572433 | 307..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:44 Download gff for
MXO02315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9571501..9571753 | 1..253 | 98 | -> | Plus |
arm_2L | 9571842..9571894 | 254..306 | 100 | -> | Plus |
arm_2L | 9571956..9572433 | 307..784 | 99 | | Plus |