Clone MXO02315 Report

Search the DGRC for MXO02315

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:15
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3838-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02315.3prime Sequence

682 bp (604 high quality bases) assembled on 2007-01-19

> MXO02315.3prime
ATGGTCTAGAAAGCTTGCTTGTTTCCTCCAATCGCGTCCAGAGCTGCGCC
TTTGATGCTTAACAGATCCCCCATTGCTGCTACCGCCACTTCCGTTGACT
ACGCCAGATACGCCTCCTCCGTTGCTGTGATCCTGGGCGGGATATCGGGT
TACAACGTCGTCAATTAGCTCCAGAATGCCAATCTTGAACTTGCGACGTT
GCTGTGGAGTGAGAGTCGCCAGATCTGGGAGAATGCTGCGGAAGAACTCC
ATGTCCGCCACTTCCGACGAACTCAGTCCGCCGTAAATACTTCCTGCATT
CGTCATCGTGCTGGTGGCCTCGCATTCCGTCTTGATTCTTTTCGTGCTCC
CCGGTTCGTAGGATGCTGGGTGATGATCCATGGACAATGTCAAAGGATGT
GGATGCGAGTGCGGATGGTAGTGCAGAGGCGGTGGTGTGCCATGTCCACC
ATCGCTGTAGATGAGTTGCGAGCCCGTCTCGGCCAGCTGCACATCTGGAA
TGAAGTTTTTCATGCTATCCGCACTAGCGGTATCGCTTCTGGCCGGTGAA
TTGCCTCCGCCTCCTTGAAGGGCAGAACTGCGAGTGGGCGTGGACGAAGT
ACGATTCCTACCCAGGGTGTTGGTAACCGCGGGATCAAAGGCGTCGATGG
TCTCCTCATCGTCCTTCTCCGATATCGAGTAC

MXO02315.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-PA 1308 CG3838-RA 642..1305 682..19 3295 99.8 Minus
CG3838-PB 1308 CG3838-RB 642..1305 682..19 3295 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 3091 CG3838-RB 1818..2481 682..19 3305 99.8 Minus
CG3838-RA 2256 CG3838-RA 983..1646 682..19 3305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9572299..9572962 682..19 3305 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:01 has no hits.

MXO02315.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:13 Download gff for MXO02315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-PB 642..1308 15..682 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:03 Download gff for MXO02315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 983..1651 14..682 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:14 Download gff for MXO02315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 983..1651 14..682 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:14 Download gff for MXO02315.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9572299..9572967 14..682 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:03 Download gff for MXO02315.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9572299..9572967 14..682 99   Minus

MXO02315.5prime Sequence

785 bp (707 high quality bases) assembled on 2007-01-19

> MXO02315.5prime
CAGTCGACATGACCACCTCAACCCGCACCAGCAGCAACAACCACAGCAGC
GAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAACCACCACAG
TCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGGATCCACCA
ACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCGTCAACCTG
GTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAGTACCGCAA
CAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGAGACAAGAG
AAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGGCCTGCCTA
TCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCACAAGCCATA
CTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAAGTCCAGCC
GTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACCAGATGTCC
CAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCACTCCATGC
GACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAATAATAATA
ATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGGAGATGAAG
TACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCCTTTGATCC
CGCGGTTACCAACACCCTGAGTATGAATCGTACTTCGTCCACGCCCACTC
GCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCA

MXO02315.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-PA 1308 CG3838-RA 1..777 9..785 3835 99.7 Plus
CG3838-PB 1308 CG3838-RB 1..777 9..785 3835 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 3091 CG3838-RB 1177..1953 9..785 3855 99.7 Plus
CG3838-RA 2256 CG3838-RA 342..1118 9..785 3855 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9571955..9572434 306..785 2385 99.8 Plus
2L 23513712 2L 9571509..9571754 9..254 1215 99.6 Plus
2L 23513712 2L 9571838..9571894 250..306 285 100 Plus
Blast to na_te.dros performed 2014-11-28 22:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 27..263 175 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6898 26..129 144 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2431 8..99 134 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2527 2..99 131 62.2 Plus
roo 9092 roo DM_ROO 9092bp 1054..1141 16..100 126 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2887 26..99 125 66.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..177 5..51 118 72.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9207 5..51 118 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7376..7468 5..102 117 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1585 4..55 113 71.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7947..7985 11..50 107 77.5 Plus
TART-C 11124 TART-C TARTC 11124bp 9391..9429 11..50 107 77.5 Plus

MXO02315.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:14 Download gff for MXO02315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-PB 1..776 9..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:44 Download gff for MXO02315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 334..1117 1..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:23 Download gff for MXO02315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 334..1117 1..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:23 Download gff for MXO02315.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9571501..9571753 1..253 98 -> Plus
2L 9571842..9571894 254..306 100 -> Plus
2L 9571956..9572433 307..784 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:44 Download gff for MXO02315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9571501..9571753 1..253 98 -> Plus
arm_2L 9571842..9571894 254..306 100 -> Plus
arm_2L 9571956..9572433 307..784 99   Plus