MXO02316.3prime Sequence
819 bp (688 high quality bases) assembled on 2007-01-19
> MXO02316.3prime
ATGGTCTAGAAAGCTTGCATTATGCGGAAATAAATTAAGAATAGCCGCGC
ATATGGTCTTGGCGTCGGTCTCCTCCGGATAGAGCTGCAGTACGGCATGC
ACCTGGTGCGGTGGGAAAAGGCTGCCCAGGTGATAGCGCAGCAATCGGCG
CTGCTCCTCCCGCGGAAGCTGCTGCGAGGCGTGCAGCTCCTCGTTGATGC
GCGAATCGGAGGCAGACAGATGGGCGAAGTTGTGAGCGGGCAGTGGCAGA
CCCAGTCCCTGATCCGTGACCGGGGCGGATGGCGTGCGCGTCAGATACTG
GTGGTGATAGTTGGTGCTGGAGTTGGACTGTTGATGCTGCTGCTGTGCCT
GGTGTTGTTGTTGCTGGAGGGGAGCACTGTAGGTGGGCACCAGCAGGCGG
TAGGCGGGCGGCGGTTGTTGGCGCTGCAGCTTCTTGTGGCGATTGGGCTG
GCTGGATTCCACGGCACCCTCTGAAAGATCCATTTGAGCGGAGAAGCCCT
GACATACCTGCTCGATGGTATTTGACTTGGTGCGCCCCAGCGGCTCCCGG
CTAATCAGTGAGTTGATCTTAACATTGTTATTATTGCCACCCGGACTGAC
CAACTGTTGGCCACCGTTCGTGTGCAGGGGCGCGCTGTGGGAGGCCTGCA
GCGGGAGGCGCTGCAGCAGTGGCGCCTGATTGTGATGCCGGAACTTGCAC
TTCTGGCCGTAGGTGCACTTCTTGCCGTACGGACACAACTGCTGCGCATC
CGCCATTTTCTGCTGCGTCTGCGAGCACAGGAAGAGGTCCAGATTTGGAC
CCGATCTGCCCAGCGGATC
MXO02316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10889-PA | 1623 | CG10889-RA | 820..1620 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10889-RA | 2176 | CG10889-RA | 958..1758 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20034299..20035099 | 19..819 | 4005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1591 | 368..290 | 180 | 73.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6857 | 431..294 | 175 | 63.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2466 | 450..288 | 171 | 60 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 366..275 | 169 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2406 | 366..294 | 166 | 73 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6933 | 450..254 | 166 | 58.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2551 | 454..297 | 165 | 61.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2394 | 434..294 | 162 | 62.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6917 | 450..294 | 162 | 60 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6805 | 366..292 | 160 | 72 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6838 | 366..292 | 160 | 72 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6946 | 438..308 | 158 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6794 | 370..294 | 152 | 70.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6819 | 366..299 | 152 | 73.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6817 | 366..292 | 151 | 70.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1606 | 385..295 | 148 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2502 | 454..275 | 148 | 59.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2511 | 366..288 | 146 | 70.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1115..1152 | 366..329 | 145 | 86.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6851 | 366..288 | 144 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2538 | 454..288 | 139 | 57.7 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7964..8076 | 366..248 | 139 | 61.3 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9408..9520 | 366..248 | 139 | 61.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6900 | 366..299 | 134 | 70.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2417 | 366..292 | 131 | 67.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1125 | 367..299 | 130 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2613..2689 | 369..290 | 123 | 67.1 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 522..599 | 372..295 | 120 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1630 | 369..295 | 119 | 63.6 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6059..6097 | 370..332 | 114 | 76.9 | Minus |
MXO02316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:14 Download gff for
MXO02316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10889-PA | 820..1623 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:25 Download gff for
MXO02316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10889-RA | 957..1763 | 12..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:55 Download gff for
MXO02316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10889-RA | 958..1764 | 12..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:55 Download gff for
MXO02316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20034293..20035099 | 12..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:25 Download gff for
MXO02316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15860015..15860821 | 12..819 | 99 | | Plus |
MXO02316.5prime Sequence
874 bp (774 high quality bases) assembled on 2007-01-19
> MXO02316.5prime
CAGTCGACATGCGCATCAAGATGGATTCCTAAGTGCAGGAGCAACACAAA
CAGCAGCAACAACAACAGCAGGTCCACCAGCAACAACAAAAACACGGCAG
CAGCAACAAGTTGCCAGTGAGAAAGCAGGAAAGCTGCTCCGACGACGATG
AGAGCCAGAGTCCCAGCCGCACAACGGAGCGCCAGAACCTGGAGTTCGCC
AAAAAGCTAGGCTACAGCGAACAGTCCATCCATTCGGCGCTGACGCGCCT
CGGCTCGGAAGCCAAGCAGAACGAGCTGCTGGCGGAGCTGATCAAGCTGA
CGGCCGATGCACCGCGGCCCGCCCACATAGGCGGAGGCGGCAGTCCATCC
AGCATGACCAGCACTCTGTCCTCCCCGACCGGCGGTAGCAACAGCTCTGG
CTTGAGACACATCGTAATCGATGGCAGTAATGTCGCCCTTTCTCACGGCA
ACAATCTAGTATTCTCTTGCCGCGGCATTCGCATCTGTGTGGACTGGTTC
CGGCAGCGTGGCCATCGCGACATCACCGCTTTCGTGCCCAACTGGCGCAA
GGAGATGGCGAACAACAACATAGCCGACCAGGAGCTGCTCTACGAGCTGG
AGCACGAAAGATACCTGGTGTTCACGCCATCGCGACATCTGGATGGCAAG
CGTGTGTCCTGCTACGATGATCGCTTCATACTCAAGCTGGCAGTGGAAAC
TGACGGCATTGTAGTCTCCAACGACAACTACAGGGATCTGATCCTGGAGA
GTAACGAGTTTAGGCGCGTGGTGCAGGAGCGCCTGTTGATGTACTCTTTT
GTAAATGACATCTTCATGCCACCCGACGATCCGCTGGGAAGATCGGGTCC
AAATCTGGACCTCTTCCTGTGCCC
MXO02316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10889-PA | 1623 | CG10889-RA | 1..864 | 9..872 | 4245 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10889-RA | 2176 | CG10889-RA | 139..1002 | 9..872 | 4275 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20035055..20035918 | 872..9 | 4275 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:11 has no hits.
MXO02316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:14 Download gff for
MXO02316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10889-PA | 1..866 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:09 Download gff for
MXO02316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10889-RA | 131..1003 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:20 Download gff for
MXO02316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10889-RA | 132..1004 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:20 Download gff for
MXO02316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20035053..20035925 | 1..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:09 Download gff for
MXO02316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15860775..15861647 | 1..874 | 99 | | Minus |