Clone MXO02316 Report

Search the DGRC for MXO02316

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:16
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG10889-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02316.3prime Sequence

819 bp (688 high quality bases) assembled on 2007-01-19

> MXO02316.3prime
ATGGTCTAGAAAGCTTGCATTATGCGGAAATAAATTAAGAATAGCCGCGC
ATATGGTCTTGGCGTCGGTCTCCTCCGGATAGAGCTGCAGTACGGCATGC
ACCTGGTGCGGTGGGAAAAGGCTGCCCAGGTGATAGCGCAGCAATCGGCG
CTGCTCCTCCCGCGGAAGCTGCTGCGAGGCGTGCAGCTCCTCGTTGATGC
GCGAATCGGAGGCAGACAGATGGGCGAAGTTGTGAGCGGGCAGTGGCAGA
CCCAGTCCCTGATCCGTGACCGGGGCGGATGGCGTGCGCGTCAGATACTG
GTGGTGATAGTTGGTGCTGGAGTTGGACTGTTGATGCTGCTGCTGTGCCT
GGTGTTGTTGTTGCTGGAGGGGAGCACTGTAGGTGGGCACCAGCAGGCGG
TAGGCGGGCGGCGGTTGTTGGCGCTGCAGCTTCTTGTGGCGATTGGGCTG
GCTGGATTCCACGGCACCCTCTGAAAGATCCATTTGAGCGGAGAAGCCCT
GACATACCTGCTCGATGGTATTTGACTTGGTGCGCCCCAGCGGCTCCCGG
CTAATCAGTGAGTTGATCTTAACATTGTTATTATTGCCACCCGGACTGAC
CAACTGTTGGCCACCGTTCGTGTGCAGGGGCGCGCTGTGGGAGGCCTGCA
GCGGGAGGCGCTGCAGCAGTGGCGCCTGATTGTGATGCCGGAACTTGCAC
TTCTGGCCGTAGGTGCACTTCTTGCCGTACGGACACAACTGCTGCGCATC
CGCCATTTTCTGCTGCGTCTGCGAGCACAGGAAGAGGTCCAGATTTGGAC
CCGATCTGCCCAGCGGATC

MXO02316.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 1623 CG10889-RA 820..1620 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 958..1758 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20034299..20035099 19..819 4005 100 Plus
Blast to na_te.dros performed 2014-11-28 20:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1591 368..290 180 73.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 431..294 175 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2466 450..288 171 60 Minus
roo 9092 roo DM_ROO 9092bp 1073..1163 366..275 169 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2406 366..294 166 73 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6933 450..254 166 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2551 454..297 165 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2251..2394 434..294 162 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6917 450..294 162 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6805 366..292 160 72 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6838 366..292 160 72 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6946 438..308 158 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6794 370..294 152 70.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6819 366..299 152 73.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6817 366..292 151 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1606 385..295 148 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2502 454..275 148 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2511 366..288 146 70.9 Minus
roo 9092 roo DM_ROO 9092bp 1115..1152 366..329 145 86.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 366..288 144 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2538 454..288 139 57.7 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..8076 366..248 139 61.3 Minus
TART-C 11124 TART-C TARTC 11124bp 9408..9520 366..248 139 61.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6836..6900 366..299 134 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2417 366..292 131 67.1 Minus
roo 9092 roo DM_ROO 9092bp 1060..1125 367..299 130 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2689 369..290 123 67.1 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 522..599 372..295 120 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1630 369..295 119 63.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6059..6097 370..332 114 76.9 Minus

MXO02316.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:14 Download gff for MXO02316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 820..1623 18..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:25 Download gff for MXO02316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 957..1763 12..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:55 Download gff for MXO02316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 958..1764 12..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:55 Download gff for MXO02316.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20034293..20035099 12..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:25 Download gff for MXO02316.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860015..15860821 12..819 99   Plus

MXO02316.5prime Sequence

874 bp (774 high quality bases) assembled on 2007-01-19

> MXO02316.5prime
CAGTCGACATGCGCATCAAGATGGATTCCTAAGTGCAGGAGCAACACAAA
CAGCAGCAACAACAACAGCAGGTCCACCAGCAACAACAAAAACACGGCAG
CAGCAACAAGTTGCCAGTGAGAAAGCAGGAAAGCTGCTCCGACGACGATG
AGAGCCAGAGTCCCAGCCGCACAACGGAGCGCCAGAACCTGGAGTTCGCC
AAAAAGCTAGGCTACAGCGAACAGTCCATCCATTCGGCGCTGACGCGCCT
CGGCTCGGAAGCCAAGCAGAACGAGCTGCTGGCGGAGCTGATCAAGCTGA
CGGCCGATGCACCGCGGCCCGCCCACATAGGCGGAGGCGGCAGTCCATCC
AGCATGACCAGCACTCTGTCCTCCCCGACCGGCGGTAGCAACAGCTCTGG
CTTGAGACACATCGTAATCGATGGCAGTAATGTCGCCCTTTCTCACGGCA
ACAATCTAGTATTCTCTTGCCGCGGCATTCGCATCTGTGTGGACTGGTTC
CGGCAGCGTGGCCATCGCGACATCACCGCTTTCGTGCCCAACTGGCGCAA
GGAGATGGCGAACAACAACATAGCCGACCAGGAGCTGCTCTACGAGCTGG
AGCACGAAAGATACCTGGTGTTCACGCCATCGCGACATCTGGATGGCAAG
CGTGTGTCCTGCTACGATGATCGCTTCATACTCAAGCTGGCAGTGGAAAC
TGACGGCATTGTAGTCTCCAACGACAACTACAGGGATCTGATCCTGGAGA
GTAACGAGTTTAGGCGCGTGGTGCAGGAGCGCCTGTTGATGTACTCTTTT
GTAAATGACATCTTCATGCCACCCGACGATCCGCTGGGAAGATCGGGTCC
AAATCTGGACCTCTTCCTGTGCCC

MXO02316.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 1623 CG10889-RA 1..864 9..872 4245 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 139..1002 9..872 4275 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20035055..20035918 872..9 4275 99.7 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:11 has no hits.

MXO02316.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:14 Download gff for MXO02316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 1..866 9..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:09 Download gff for MXO02316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 131..1003 1..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:20 Download gff for MXO02316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 132..1004 1..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:20 Download gff for MXO02316.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20035053..20035925 1..874 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:09 Download gff for MXO02316.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860775..15861647 1..874 99   Minus