Clone MXO02317 Report

Search the DGRC for MXO02317

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:17
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4844-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02317.3prime Sequence

812 bp (734 high quality bases) assembled on 2007-01-19

> MXO02317.3prime
ATGGTCTAGAAAGCTTGCGTTATTGGCCGCCATTGGCTTGCCGAGGACAC
GCATGGCATTGGAGTAGTCCGAATCGATCTGCGGAATGATCTGCTGTTCG
TTGGGCCGCAGGGTGCGTATCAGATCGTTGAGTGACAGGGAGGATTGGGG
GGTCAGCTCCTCCTTGGGCTGCAGCTCCTGGGAGCTGGCCATTTTCTGGA
AGTCCTGGGCGATCTGCTTGATGCGCTCCTCGATGGCGGCGGCTGGGGAT
TCAGTGGAGCTGGGCATCGCCAATGGTTCGTTGGCCTTGATAAGATCCAC
CGGCGTCTCATTTTCCAAGTCAGTCTCGCCCTCAGCTCCATCCTGCTCGT
GCTCTCCATCCGCCTCCGCATCGTGTTGCTTTTTCTCGTTATCCTCAGCC
GCCGCGGGAGCTGGTGCCGAGTCCGCATCCGCATCCTCCTGCTGCAACTG
CTGCTGTACCTCTTCGATCGAATGCACCTCGGGGTGGAGTTCGTTGTCGC
TCAGTGGGAATACGTGCTCCTTGATATCGCCATCGTTGTCGTTGCTCAGC
TCACGGGCATGCTCCTCGAAGTTGTCGTGCTCGTCATGCTCCTCTTCGCC
CTCGGCCTCATGGTCATCGTGCTCCTCGCCATCCAAATCCGCTTCCTGAT
CCTCCACATCCACGTCAGTGGAATCCGTATCGGGCAGCGAGCGATCATGG
TTCAGCTTAAAGGACATAAACGAGGGTTGCTGCTGGGAGCTGGAATCATC
GATCAGTCGGTGGCCAACGGCTGGCGAAAATTTGGCCTTGGCAGCGGTGT
ACATTGCTCCAC

MXO02317.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4844-PA 852 CG4844-RA 56..484 812..384 2120 99.7 Minus
CG4844-PB 852 CG4844-RB 56..484 812..384 2120 99.7 Minus
CG4844-PA 852 CG4844-RA 489..849 379..19 1805 100 Minus
CG4844-PB 852 CG4844-RB 489..849 379..19 1805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RE 2012 CG43164-RE 909..1702 812..19 3895 99.4 Minus
CG43164-RC 2338 CG43164-RC 1235..2028 812..19 3895 99.4 Minus
CG43164-RB 2447 CG43164-RB 1344..2137 812..19 3895 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507542..17508335 812..19 3895 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:21 has no hits.

MXO02317.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:15 Download gff for MXO02317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4844-PB 56..852 18..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:15 Download gff for MXO02317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1344..2142 13..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:24 Download gff for MXO02317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1344..2142 13..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:24 Download gff for MXO02317.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17507542..17508340 13..812 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:15 Download gff for MXO02317.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13395047..13395845 13..812 99   Minus

MXO02317.5prime Sequence

712 bp (633 high quality bases) assembled on 2007-01-19

> MXO02317.5prime
CAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCTTGCCCCTG
CTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCCAAATCTTC
GCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCAGCAGCAAC
CCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGCCCGATACG
GATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTGGATGGCGA
GGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGACGAGCACG
ACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACGATGGCGAT
ATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCACCCCGAGGT
GCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGATGCGGATG
CGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGAGCTCGCAA
CACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCTGAGGGCGA
GACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGCCAACGAAC
CATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCATCGAGGAG
CGCATCAAGCAGATCGCCCAGAACTTCCAGAAAATGGCCAGCTCCCAGGA
GCTGCAGCCCAA

MXO02317.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4844-PA 852 CG4844-RA 1..704 9..712 3495 99.8 Plus
CG4844-PB 852 CG4844-RB 1..704 9..712 3495 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RE 2012 CG43164-RE 854..1557 9..712 3505 99.9 Plus
CG43164-RC 2338 CG43164-RC 1180..1883 9..712 3505 99.9 Plus
CG43164-RB 2447 CG43164-RB 1289..1992 9..712 3505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507487..17508190 9..712 3505 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 19:25:49 has no hits.

MXO02317.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:15 Download gff for MXO02317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4844-PB 1..702 9..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:40 Download gff for MXO02317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..1990 9..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:43 Download gff for MXO02317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..1990 9..710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:43 Download gff for MXO02317.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17507487..17508188 9..710 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:40 Download gff for MXO02317.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13394992..13395693 9..710 99   Plus