MXO02318.3prime Sequence
877 bp (785 high quality bases) assembled on 2007-01-19
> MXO02318.3prime
ATGGTCTAGAAAGCTTGCCTTTTCCGCGGGAATAGCTTGTGGAGTCGACC
GGTTGCCAGCCAGCTCCTGCTGAATCTCGTTGAGACTCTTGCCCTTGGTT
TCCGGCACGGCGAAATAAACGAATATCACACCCACAACAGTCAGACCAGC
GAATAGCCAGAAGGTTCCGCCAATTCCCAGGCCATCGTTCAAGTTCACAA
ACGTCTTGGTCACCACGAATGCCAAAAGCCAGTTGGATGTTCCGGCCAGC
GATCCAGCAAATCCCTTGATGTCGGTGGCGAAGAGCTCTCCCATCATCAG
CCATGGCACCGGTCCATAGCCGATCGAGAACATGATGATGAACAGGCACA
GACTGGCCACTGGGAGCCAGCCCAGACTCACCACTTGTGCCGCGTCCTGT
TTCTGGAGGAAGAAGTACACTCCGATGGCGGTGGTGGAAATGGCCATGGA
AATTCCTGAGGCCAACAGCAGGATGCGACGGCCCAGCTTGTCTACTACCA
GGGTGGAGACGAAGGTGGCCACCACTTGCATGATACCGATCAGGATCGTT
GCCCACTCAGCCTCGATGCCAGTGTTGGCTTCCAAAAAGATCCTCGAAGC
GTAGAAAATAACAGCATTGATTCCGCAGACCTGCTGGAAGAACATAAGAC
CCATGCTGATGGCCAAAGCCTTCCGGGTGACGGGTCGGTTCAGAGCAGCC
CACACGTTGACCTTGTTGGCCTTGGTTTCCCGGTCGGTTTCACGCAGCTC
CGCCAGCTCTGGCTCGTANTCGTATTCCTTGCCACGCAGCCATTGAATGG
ACTTTGATGGCGTTCTCCGACCGATCTTTGGAAACCAAGTAGGTGGGCGA
TTCCGGCATGGAAAAGAAGATGGCGCC
MXO02318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10960-PC | 1416 | CG10960-RC | 556..1413 | 877..19 | 4211 | 99.6 | Minus |
CG10960-PB | 1620 | CG10960-RB | 760..1617 | 877..19 | 4211 | 99.6 | Minus |
CG10960-PA | 1416 | CG10960-RA | 556..1413 | 877..19 | 4211 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10960-RA | 2355 | CG10960-RA | 636..1493 | 877..19 | 4244 | 99.7 | Minus |
CG10960-RB | 2968 | CG10960-RB | 1249..2106 | 877..19 | 4244 | 99.7 | Minus |
CG10960-RC | 2664 | CG10960-RC | 945..1802 | 877..19 | 4244 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12825742..12826306 | 19..583 | 2825 | 100 | Plus |
3L | 28110227 | 3L | 12826375..12826628 | 582..836 | 1214 | 99.2 | Plus |
3L | 28110227 | 3L | 12826960..12827003 | 834..877 | 205 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:34:42 has no hits.
MXO02318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:15 Download gff for
MXO02318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10960-PA | 556..1416 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:18 Download gff for
MXO02318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10960-RC | 945..1807 | 14..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:41 Download gff for
MXO02318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10960-RC | 945..1807 | 14..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:41 Download gff for
MXO02318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12825737..12826305 | 14..582 | 99 | <- | Plus |
3L | 12826376..12826627 | 583..835 | 99 | <- | Plus |
3L | 12826962..12827003 | 836..877 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:18 Download gff for
MXO02318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12818837..12819405 | 14..582 | 99 | <- | Plus |
arm_3L | 12819476..12819727 | 583..835 | 99 | <- | Plus |
arm_3L | 12820062..12820103 | 836..877 | 97 | | Plus |
MXO02318.5prime Sequence
897 bp (790 high quality bases) assembled on 2007-01-19
> MXO02318.5prime
CAGTCGACATGTCCACCGCATCGTCGAGCAACTCCAGCGGCGAGGAGGCC
AACAAAAAGTCCGGCTCCAACAACGAGGAGAGCTCCCACCTGCTGGAATC
CGCCGAAAATGGAGCCAAGTACGGCTCCAGACAGCCGGTCAAAATCGTCA
AAGCCAGCGATAATGGACGCACCAGCTCCACACCACATGATCAGGAGAAT
CTACTGGGCAACATGGTGCACACGTCTACTTCGAATAACTCCCAGAAGTG
GCCACAATATGTGGCCGCATTGGCCGCTGCTGGTGGCGCCTTCGCCGCCG
GTACCGTCCTGGGTTGGACATCGCCGGCCGAAACGGAGATCGTGGATCGC
GGCGAAGGATACGATTTCCCTGTCGACAAGGATCAGTTTTCGTGGGTAGG
ATCTGCCATGACCCTGGGTGCCGCCTGTGTGTGCATTCCCATTGGCTTCC
TGATCAACATGATTGGCCGAAAGTGGACCATGCTGTTTCTGGTGCTGCCC
TTCATTCTCGGTTGGACCATGCTCATCTGGGCGGTCAATGTCAGTATGCT
GTATGCCTCGCGCTTCATCCTCGGTATCGCCGGTGGAGCTTTCTGTGTGA
CCGCTCCCATGTACACGGGTGAGATTGCTCAGAAGGAGATTCGCGGAACG
CTGGGCAGCTTCTTCCAGTTGATGATAACCATTGGTATCCTGTTCGTCTA
TGCCGTCGGAACTGGTGTGAAAATATTCTGGTTGAGCATCATTTGCGGCA
TTCTGCCCCTCATCTTTGGCGCCATCTTCTTTTTCATGCCGGAATCGCCC
ACCTACTTGGTTTCAAAGATCGGTCGGAAAACGCAATCAAGTCCATTCAA
TGGCTGCGTGGCAAGGGATACGATTACGAGCCAAAGCTGGCGAGCTG
MXO02318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10960-PB | 1620 | CG10960-RB | 1..885 | 9..892 | 4260 | 99.3 | Plus |
CG10960-PC | 1416 | CG10960-RC | 1..681 | 213..892 | 3240 | 99.1 | Plus |
CG10960-PA | 1416 | CG10960-RA | 1..681 | 213..892 | 3240 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10960-RB | 2968 | CG10960-RB | 485..1380 | 4..897 | 4340 | 99.1 | Plus |
CG10960-RC | 2664 | CG10960-RC | 365..1076 | 188..897 | 3435 | 99 | Plus |
CG10960-RA | 2355 | CG10960-RA | 57..767 | 189..897 | 3430 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12826960..12827582 | 811..189 | 3100 | 99.8 | Minus |
3L | 28110227 | 3L | 12831882..12832067 | 189..4 | 915 | 99.5 | Minus |
3L | 28110227 | 3L | 12826544..12826622 | 892..814 | 335 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:30 has no hits.
MXO02318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:15 Download gff for
MXO02318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10960-PB | 1..891 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:21 Download gff for
MXO02318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10960-RB | 482..1380 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:29 Download gff for
MXO02318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10960-RB | 482..1380 | 1..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:29 Download gff for
MXO02318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12826538..12826627 | 810..897 | 93 | <- | Minus |
3L | 12826962..12827582 | 189..809 | 99 | <- | Minus |
3L | 12831883..12832069 | 1..188 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:21 Download gff for
MXO02318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12819638..12819727 | 810..897 | 93 | <- | Minus |
arm_3L | 12820062..12820682 | 189..809 | 99 | <- | Minus |
arm_3L | 12824983..12825169 | 1..188 | 98 | | Minus |