Clone MXO02318 Report

Search the DGRC for MXO02318

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:18
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG10960-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02318.3prime Sequence

877 bp (785 high quality bases) assembled on 2007-01-19

> MXO02318.3prime
ATGGTCTAGAAAGCTTGCCTTTTCCGCGGGAATAGCTTGTGGAGTCGACC
GGTTGCCAGCCAGCTCCTGCTGAATCTCGTTGAGACTCTTGCCCTTGGTT
TCCGGCACGGCGAAATAAACGAATATCACACCCACAACAGTCAGACCAGC
GAATAGCCAGAAGGTTCCGCCAATTCCCAGGCCATCGTTCAAGTTCACAA
ACGTCTTGGTCACCACGAATGCCAAAAGCCAGTTGGATGTTCCGGCCAGC
GATCCAGCAAATCCCTTGATGTCGGTGGCGAAGAGCTCTCCCATCATCAG
CCATGGCACCGGTCCATAGCCGATCGAGAACATGATGATGAACAGGCACA
GACTGGCCACTGGGAGCCAGCCCAGACTCACCACTTGTGCCGCGTCCTGT
TTCTGGAGGAAGAAGTACACTCCGATGGCGGTGGTGGAAATGGCCATGGA
AATTCCTGAGGCCAACAGCAGGATGCGACGGCCCAGCTTGTCTACTACCA
GGGTGGAGACGAAGGTGGCCACCACTTGCATGATACCGATCAGGATCGTT
GCCCACTCAGCCTCGATGCCAGTGTTGGCTTCCAAAAAGATCCTCGAAGC
GTAGAAAATAACAGCATTGATTCCGCAGACCTGCTGGAAGAACATAAGAC
CCATGCTGATGGCCAAAGCCTTCCGGGTGACGGGTCGGTTCAGAGCAGCC
CACACGTTGACCTTGTTGGCCTTGGTTTCCCGGTCGGTTTCACGCAGCTC
CGCCAGCTCTGGCTCGTANTCGTATTCCTTGCCACGCAGCCATTGAATGG
ACTTTGATGGCGTTCTCCGACCGATCTTTGGAAACCAAGTAGGTGGGCGA
TTCCGGCATGGAAAAGAAGATGGCGCC

MXO02318.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10960-PC 1416 CG10960-RC 556..1413 877..19 4211 99.6 Minus
CG10960-PB 1620 CG10960-RB 760..1617 877..19 4211 99.6 Minus
CG10960-PA 1416 CG10960-RA 556..1413 877..19 4211 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10960-RA 2355 CG10960-RA 636..1493 877..19 4244 99.7 Minus
CG10960-RB 2968 CG10960-RB 1249..2106 877..19 4244 99.7 Minus
CG10960-RC 2664 CG10960-RC 945..1802 877..19 4244 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12825742..12826306 19..583 2825 100 Plus
3L 28110227 3L 12826375..12826628 582..836 1214 99.2 Plus
3L 28110227 3L 12826960..12827003 834..877 205 97.7 Plus
Blast to na_te.dros performed on 2014-11-28 23:34:42 has no hits.

MXO02318.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:15 Download gff for MXO02318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10960-PA 556..1416 15..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:18 Download gff for MXO02318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10960-RC 945..1807 14..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:41 Download gff for MXO02318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10960-RC 945..1807 14..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:41 Download gff for MXO02318.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12825737..12826305 14..582 99 <- Plus
3L 12826376..12826627 583..835 99 <- Plus
3L 12826962..12827003 836..877 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:18 Download gff for MXO02318.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12818837..12819405 14..582 99 <- Plus
arm_3L 12819476..12819727 583..835 99 <- Plus
arm_3L 12820062..12820103 836..877 97   Plus

MXO02318.5prime Sequence

897 bp (790 high quality bases) assembled on 2007-01-19

> MXO02318.5prime
CAGTCGACATGTCCACCGCATCGTCGAGCAACTCCAGCGGCGAGGAGGCC
AACAAAAAGTCCGGCTCCAACAACGAGGAGAGCTCCCACCTGCTGGAATC
CGCCGAAAATGGAGCCAAGTACGGCTCCAGACAGCCGGTCAAAATCGTCA
AAGCCAGCGATAATGGACGCACCAGCTCCACACCACATGATCAGGAGAAT
CTACTGGGCAACATGGTGCACACGTCTACTTCGAATAACTCCCAGAAGTG
GCCACAATATGTGGCCGCATTGGCCGCTGCTGGTGGCGCCTTCGCCGCCG
GTACCGTCCTGGGTTGGACATCGCCGGCCGAAACGGAGATCGTGGATCGC
GGCGAAGGATACGATTTCCCTGTCGACAAGGATCAGTTTTCGTGGGTAGG
ATCTGCCATGACCCTGGGTGCCGCCTGTGTGTGCATTCCCATTGGCTTCC
TGATCAACATGATTGGCCGAAAGTGGACCATGCTGTTTCTGGTGCTGCCC
TTCATTCTCGGTTGGACCATGCTCATCTGGGCGGTCAATGTCAGTATGCT
GTATGCCTCGCGCTTCATCCTCGGTATCGCCGGTGGAGCTTTCTGTGTGA
CCGCTCCCATGTACACGGGTGAGATTGCTCAGAAGGAGATTCGCGGAACG
CTGGGCAGCTTCTTCCAGTTGATGATAACCATTGGTATCCTGTTCGTCTA
TGCCGTCGGAACTGGTGTGAAAATATTCTGGTTGAGCATCATTTGCGGCA
TTCTGCCCCTCATCTTTGGCGCCATCTTCTTTTTCATGCCGGAATCGCCC
ACCTACTTGGTTTCAAAGATCGGTCGGAAAACGCAATCAAGTCCATTCAA
TGGCTGCGTGGCAAGGGATACGATTACGAGCCAAAGCTGGCGAGCTG

MXO02318.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10960-PB 1620 CG10960-RB 1..885 9..892 4260 99.3 Plus
CG10960-PC 1416 CG10960-RC 1..681 213..892 3240 99.1 Plus
CG10960-PA 1416 CG10960-RA 1..681 213..892 3240 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10960-RB 2968 CG10960-RB 485..1380 4..897 4340 99.1 Plus
CG10960-RC 2664 CG10960-RC 365..1076 188..897 3435 99 Plus
CG10960-RA 2355 CG10960-RA 57..767 189..897 3430 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12826960..12827582 811..189 3100 99.8 Minus
3L 28110227 3L 12831882..12832067 189..4 915 99.5 Minus
3L 28110227 3L 12826544..12826622 892..814 335 94.9 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:30 has no hits.

MXO02318.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:15 Download gff for MXO02318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10960-PB 1..891 9..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:21 Download gff for MXO02318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10960-RB 482..1380 1..897 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:29 Download gff for MXO02318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10960-RB 482..1380 1..897 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:29 Download gff for MXO02318.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12826538..12826627 810..897 93 <- Minus
3L 12826962..12827582 189..809 99 <- Minus
3L 12831883..12832069 1..188 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:21 Download gff for MXO02318.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12819638..12819727 810..897 93 <- Minus
arm_3L 12820062..12820682 189..809 99 <- Minus
arm_3L 12824983..12825169 1..188 98   Minus