Clone MXO02319 Report

Search the DGRC for MXO02319

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:19
Vector:pMK33-CTAP-BD
Associated Gene/Transcript5-HT7-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02319.3prime Sequence

817 bp (760 high quality bases) assembled on 2007-01-19

> MXO02319.3prime
ATGGTCTAGAAAGCTTGCGAGAAAGCTCTCCCTCGCCCCGTGCCTCTCAT
CGCCCAGCATCACCCGCTGCGAGGGAGGCTCGCCATACTGATCCTGGTAG
TAGTTCTCCCGCATCATGGTGTTCAGGCTGGAGCAGCGGAAGTAGAGGAT
CTCCTGGAAGGGTTTGCGGAAATCCCTGTTCAGAGTGGCGTAGATAATAG
GGTTCAGCAGGGAGTTGGCATAGCCCAGCCAGAGGAATAGAGACGAGAGC
GATGCCGGTACGTGCATTGTCTCGAAAGGACGAATTAGGGCCAGGATAAA
GAATGGCAGCCAGCAGACGGTAAAGGCCGACATGATGATGCCCAGAGTGG
TGGAGGCCTTCTTCTCTTTGGCCAGTTGAAACCGCAGCTTCTTGTGGTGC
GGAGAGCCCAGGAGTCCGGTCGAACCACTAACGCCACCCCCACTGCCGTG
CCCAGCCAGTGCGCCTCCTCCGCTGCTCAGACCCCCACAGGTGGAGTAGG
TGAGCGAAGTGTTGCCCACGCTGCTGTGCCTCTGGCCATTTCCCGAGCTG
GCCAGCTCCGTGTGGCCCAAGGGCGGAGCCTGCGGGGCCGATGGCGATCC
TGTGCCATTGAGCGCCTGTTGCAAATGCGTCTGGGCGCGTTTCTCTTCCA
GGACAATCCGCCTCGCCGCCCTGAAGATCTGGTAGTACACAAACAGCATC
ACCGAGAGTGGTATGTAAAATGAGCCCAGGGTGGCGTAGATCTGATATGC
GAAGTTCTGGCACACCGTGCAGATAGGCTGGCCCTCCTCGTCCTCGTGCT
CGTTGCCCAGGATCAGC

MXO02319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12073-PA 1695 5-HT7-RA 894..1692 817..19 3995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 2037..2835 817..19 3995 100 Minus
5-HT7-RA 3506 CG12073-RA 1963..2761 817..19 3995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30969887..30970685 19..817 3995 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:51 has no hits.

MXO02319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:16 Download gff for MXO02319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12073-PA 894..1695 18..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:49 Download gff for MXO02319.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1963..2766 13..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:13 Download gff for MXO02319.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1963..2766 13..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:13 Download gff for MXO02319.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30969882..30970685 13..817 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:49 Download gff for MXO02319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26795604..26796407 13..817 99   Plus

MXO02319.5prime Sequence

780 bp (711 high quality bases) assembled on 2007-01-19

> MXO02319.5prime
CAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATCAGAGCCAC
CGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAACTGATCTC
CACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTGGATAGCCT
ATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAGGCGAGACG
GAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTCCTGGGGGC
CATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGGCTCGGGCT
CGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGATGAACAGC
AGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGCAATTTGGG
CGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTTGCTCCTGG
AGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGTCCATATTC
GTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTGGGCAATGT
CCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAGACCCTGCA
ATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGGCTCTTCTG
GTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGGAACTTTGG
ACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTGCTGCACGG
CCTCGATCCTGAATCTGTGTGCCATATCCG

MXO02319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12073-PA 1695 5-HT7-RA 1..772 9..780 3860 100 Plus
CG3856-PB 1914 Oamb-RB 310..344 744..778 150 97.1 Plus
CG3856-PA 1938 Oamb-RA 310..344 744..778 150 97.1 Plus
CG3856-PC 1938 Oamb-RC 310..344 744..778 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1144..1915 9..780 3860 100 Plus
5-HT7-RA 3506 CG12073-RA 1070..1841 9..780 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30970807..30971578 780..9 3860 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:16:19 has no hits.

MXO02319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:16 Download gff for MXO02319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12073-PA 1..772 9..780 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:26 Download gff for MXO02319.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..1841 9..780 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:56 Download gff for MXO02319.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..1841 9..780 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:56 Download gff for MXO02319.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30970807..30971578 9..780 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:26 Download gff for MXO02319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26796529..26797300 9..780 100   Minus