MXO02320.3prime Sequence
778 bp (697 high quality bases) assembled on 2007-01-19
> MXO02320.3prime
ATGGTCTAGAAAGCTTGCGAAATTAAATAGACGCCCTATCAGGGCATTAA
ACTCATAAGCAAGTTGGCGATTGAAGTGCTTTCTCTTTTCGCTAGTGTTG
AGATGCTGACTGAGGCGGTCCGCCTTCAAACAGCGATCGATGAAGTGGGT
TTCCCCCGATGGGCAACTGCAGTGCTCGATATCGTCACAGCTTCCGTTCC
GGCAATGCTGTTGACCCTCACCACAGCCGCAGATTTCGGGAGCCACACAA
CGCCCGTATTTGCCGCAGAATCTCTCACACTTTGGCCGACACTCGGCACC
GTGGACCTCGTATCCTCGGAAGCAGCGGCACACTCCGGGCGCAATGCACA
CCCCATTTCCTTGGCCACAGTTGTCGCTGCACTCCGGCAAACAGCTGGTG
GTGTTCACGTCGTAGCGATATCCTTCGCGGCAGTGACACTTGTACCGCGA
CTCACAGAGCCCATTCTCGCAGTTCAGGTAGCACTCAGCTTCGCATACAT
TCCAATTGGGCCGTTTAATGAACCCGGCGAAGCACTCGCACTGGTTGGGC
GCCACGCACTTGCCAAATCCGCAGTCCGGAGCACAAACCGGTTGGCATCC
CAAGTCCGGCGTTCTCCGGTAGCCGGGTGAGCAGTCGCACTGGCCGGGCG
CCACACACTCCTCATGGGTGCCACATGACTGCGAACACTTCGGCCGGCAG
AACTGCCGGGTCTCCTGATCCAGGACAAAGTTCTGATGGCAGACACAGGT
GCCATTTAAATAACATCTGCCATGCTGA
MXO02320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33119-PA | 1209 | CG33119-RA | 447..1206 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1286 | CG33119-RA | 488..1247 | 778..19 | 3800 | 100 | Minus |
NimB1-RB | 1289 | CG33119-RB | 488..1250 | 778..19 | 3760 | 99.6 | Minus |
NimB4-RA | 1478 | CG33115-RA | 796..878 | 602..520 | 205 | 83.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13964154..13964457 | 778..475 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 13964795..13965049 | 273..19 | 1275 | 100 | Minus |
2L | 23513712 | 2L | 13964535..13964738 | 475..272 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 13968941..13969023 | 520..602 | 205 | 83.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:25 has no hits.
MXO02320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:17 Download gff for
MXO02320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 448..1209 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:32 Download gff for
MXO02320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 489..1247 | 19..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:16 Download gff for
MXO02320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 489..1247 | 19..777 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:16 Download gff for
MXO02320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13964797..13965049 | 19..271 | 100 | | Minus |
2L | 13964155..13964456 | 476..777 | 100 | -> | Minus |
2L | 13964535..13964738 | 272..475 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:32 Download gff for
MXO02320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13964797..13965049 | 19..271 | 100 | | Minus |
arm_2L | 13964155..13964456 | 476..777 | 100 | -> | Minus |
arm_2L | 13964535..13964738 | 272..475 | 100 | -> | Minus |
MXO02320.5prime Sequence
481 bp (462 high quality bases) assembled on 2007-01-19
> MXO02320.5prime
CAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCGCTCTACTG
ACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACGGTTTCCAC
GGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTTTGAGTCAC
TAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCGAGGTGCCT
TCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGTAATGGATC
CACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTACCGTCGCG
ATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTTCGCCAGAC
AACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGACCGCTTCGC
AGAGTTTGCCCTAGAANNANNATGGTGNNTGTNTTNNNNNNTGTNNGATT
GGNTGTNNGNNTGGNNGATGTTATTTNNNTG
MXO02320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33119-PA | 1209 | CG33119-RA | 1..400 | 9..408 | 1950 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RB | 1289 | CG33119-RB | 42..441 | 9..408 | 1970 | 99.5 | Plus |
NimB1-RA | 1286 | CG33119-RA | 42..441 | 9..408 | 1970 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963899..13964107 | 200..408 | 1015 | 99 | Plus |
2L | 23513712 | 2L | 13963548..13963738 | 9..199 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:38 has no hits.
MXO02320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:17 Download gff for
MXO02320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 1..403 | 9..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:24 Download gff for
MXO02320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 33..444 | 1..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:31 Download gff for
MXO02320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 33..444 | 1..411 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:31 Download gff for
MXO02320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963539..13963738 | 1..199 | 98 | -> | Plus |
2L | 13963899..13964110 | 200..411 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:24 Download gff for
MXO02320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963539..13963738 | 1..199 | 98 | -> | Plus |
arm_2L | 13963899..13964110 | 200..411 | 98 | | Plus |