Clone MXO02320 Report

Search the DGRC for MXO02320

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:20
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptnimB1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02320.3prime Sequence

778 bp (697 high quality bases) assembled on 2007-01-19

> MXO02320.3prime
ATGGTCTAGAAAGCTTGCGAAATTAAATAGACGCCCTATCAGGGCATTAA
ACTCATAAGCAAGTTGGCGATTGAAGTGCTTTCTCTTTTCGCTAGTGTTG
AGATGCTGACTGAGGCGGTCCGCCTTCAAACAGCGATCGATGAAGTGGGT
TTCCCCCGATGGGCAACTGCAGTGCTCGATATCGTCACAGCTTCCGTTCC
GGCAATGCTGTTGACCCTCACCACAGCCGCAGATTTCGGGAGCCACACAA
CGCCCGTATTTGCCGCAGAATCTCTCACACTTTGGCCGACACTCGGCACC
GTGGACCTCGTATCCTCGGAAGCAGCGGCACACTCCGGGCGCAATGCACA
CCCCATTTCCTTGGCCACAGTTGTCGCTGCACTCCGGCAAACAGCTGGTG
GTGTTCACGTCGTAGCGATATCCTTCGCGGCAGTGACACTTGTACCGCGA
CTCACAGAGCCCATTCTCGCAGTTCAGGTAGCACTCAGCTTCGCATACAT
TCCAATTGGGCCGTTTAATGAACCCGGCGAAGCACTCGCACTGGTTGGGC
GCCACGCACTTGCCAAATCCGCAGTCCGGAGCACAAACCGGTTGGCATCC
CAAGTCCGGCGTTCTCCGGTAGCCGGGTGAGCAGTCGCACTGGCCGGGCG
CCACACACTCCTCATGGGTGCCACATGACTGCGAACACTTCGGCCGGCAG
AACTGCCGGGTCTCCTGATCCAGGACAAAGTTCTGATGGCAGACACAGGT
GCCATTTAAATAACATCTGCCATGCTGA

MXO02320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33119-PA 1209 CG33119-RA 447..1206 778..19 3800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1286 CG33119-RA 488..1247 778..19 3800 100 Minus
NimB1-RB 1289 CG33119-RB 488..1250 778..19 3760 99.6 Minus
NimB4-RA 1478 CG33115-RA 796..878 602..520 205 83.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13964154..13964457 778..475 1520 100 Minus
2L 23513712 2L 13964795..13965049 273..19 1275 100 Minus
2L 23513712 2L 13964535..13964738 475..272 1020 100 Minus
2L 23513712 2L 13968941..13969023 520..602 205 83.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:46:25 has no hits.

MXO02320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:17 Download gff for MXO02320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 448..1209 16..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:32 Download gff for MXO02320.3prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 489..1247 19..777 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:16 Download gff for MXO02320.3prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 489..1247 19..777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:16 Download gff for MXO02320.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13964797..13965049 19..271 100   Minus
2L 13964155..13964456 476..777 100 -> Minus
2L 13964535..13964738 272..475 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:32 Download gff for MXO02320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13964797..13965049 19..271 100   Minus
arm_2L 13964155..13964456 476..777 100 -> Minus
arm_2L 13964535..13964738 272..475 100 -> Minus

MXO02320.5prime Sequence

481 bp (462 high quality bases) assembled on 2007-01-19

> MXO02320.5prime
CAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCGCTCTACTG
ACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACGGTTTCCAC
GGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTTTGAGTCAC
TAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCGAGGTGCCT
TCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGTAATGGATC
CACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTACCGTCGCG
ATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTTCGCCAGAC
AACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGACCGCTTCGC
AGAGTTTGCCCTAGAANNANNATGGTGNNTGTNTTNNNNNNTGTNNGATT
GGNTGTNNGNNTGGNNGATGTTATTTNNNTG

MXO02320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33119-PA 1209 CG33119-RA 1..400 9..408 1950 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RB 1289 CG33119-RB 42..441 9..408 1970 99.5 Plus
NimB1-RA 1286 CG33119-RA 42..441 9..408 1970 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963899..13964107 200..408 1015 99 Plus
2L 23513712 2L 13963548..13963738 9..199 955 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:54:38 has no hits.

MXO02320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:17 Download gff for MXO02320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 1..403 9..411 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:24 Download gff for MXO02320.5prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 33..444 1..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:31 Download gff for MXO02320.5prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 33..444 1..411 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:31 Download gff for MXO02320.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13963539..13963738 1..199 98 -> Plus
2L 13963899..13964110 200..411 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:24 Download gff for MXO02320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963539..13963738 1..199 98 -> Plus
arm_2L 13963899..13964110 200..411 98   Plus