MXO02321.3prime Sequence
819 bp (718 high quality bases) assembled on 2007-01-19
> MXO02321.3prime
ATGGTCTAGAAAGCTTGCAGCCTAGTAGTTAAGATTAGCCTTCTTCTTCG
CCTGCACTTCCATGATGGCGTCCATGAAGTCTTCGTGCGTAACCGAATTG
GCGGAGCGACGCAGTGCGATCATACCAGCTTCCACACAGACGGCTTTGCA
CTGGGCGCCGTTGAAGTCATCCGTGGATCGGGACAATTCCTCGAAATTCA
CATCATTGCTAACGTTCATTTTACGCGAGTGAATCTGCATAATACGGGCA
CGGGCTTCCTCGTTGGGATGTGGGAACTCGATCTTACGATCCAGACGACC
AGAGCGCAGCAGAGCAGGATCCAGAATGTCTACGCGATTGGTGGCCGCAA
TCACCTTAATATCTGCAGTGGAACTGAAGCCATCGAGCTGATTAAGAAGC
TCCAACATAGTTCGCTGGACCTCACGGTCACCGGCCTTCTCCGAATCGAA
ACGCTTGGTGCCAATGGCGTCCAACTCGTCAATGAAGATAATGGCAGGCG
CCTTCTCCTTGGCCAAGGCGAAGGCATCGCGCACCAGCTTGGCACCATCA
CCGATGAACATTTGCACCAACTGGGGACCTGCCAGCTTGAGGAAGGTGGA
CTTTGTCTGAGCGGCGCAGGCACGGGCCAGCAATGTTTTGCCAGTTCCAG
GGGGGCCGTACAAAAGGACACCTTTGGGTGGGTGAATGCCAAGGTTTTTG
AACTTCTCCTTGTGCGTCATGGGCAGCACCACTGCCTCGATGAGCTCCTG
TATCTGCTTGTCCAAACCTCCCATGTCGGAGTACTGCTCTGTAAGTCGCT
TCGTCCACTTCCATGGCTT
MXO02321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10370-PA | 1287 | Tbp-1-RA | 485..1280 | 819..23 | 3895 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt5-RA | 1627 | CG10370-RA | 623..1422 | 819..19 | 3935 | 99.5 | Minus |
| Rpt3-RB | 1553 | CG16916-RB | 955..1198 | 515..272 | 290 | 75.1 | Minus |
| Rpt3-RA | 1423 | CG16916-RA | 825..1068 | 515..272 | 290 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23753764..23754418 | 673..19 | 3260 | 99.8 | Minus |
| 3R | 32079331 | 3R | 23753562..23753711 | 819..669 | 675 | 98 | Minus |
| X | 23542271 | X | 11126187..11126430 | 515..272 | 290 | 74.6 | Minus |
| X | 23542271 | X | 21317184..21317357 | 423..250 | 285 | 77.6 | Minus |
| 3R | 32079331 | 3R | 30582518..30582688 | 253..423 | 195 | 74.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:33:24 has no hits.
MXO02321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:18 Download gff for
MXO02321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10370-PA | 485..1287 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:01 Download gff for
MXO02321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt5-RA | 623..1422 | 19..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:16 Download gff for
MXO02321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt5-RA | 623..1422 | 19..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:16 Download gff for
MXO02321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23753562..23753708 | 672..819 | 97 | -> | Minus |
| 3R | 23753766..23754418 | 19..671 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:01 Download gff for
MXO02321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19579284..19579430 | 672..819 | 97 | -> | Minus |
| arm_3R | 19579488..19580140 | 19..671 | 99 | | Minus |
