MXO02322.3prime Sequence
797 bp (721 high quality bases) assembled on 2007-01-19
> MXO02322.3prime
ATGGTCTAGAAAGCTTGCGTTTGTAGTAATCGTTATGGCCTGGGCCGGCG
ATGCATTCATGTCTTGCACTGTACGCGCCAAATAGGGCTTCGTGTTGGGC
TTTTGAAACAAGTCGGAGACATAGTTGGCCACGACCAGTGCGCTTATGGA
GCCAATAAGCGATCCTGCCAGCACATCGGACCAGTGGTGCTTGTAGTCCG
ATACGCGACTTAGGGCTGTGTACCAGGCCACCATGATGAACAGGAACTGG
AGAAGGTGACGCAGCAGCTTGGAGCCCCGCCAGGTCATGCGAGCCTGCAG
GTAGAGCGCCAGATAGACCATGGCGAAGAAGGTGAAGCTGGAGTGGCCAC
TGGGGAAGGAGAGGCGCATCTCTTTGAGCATGCTCGCCGACGATCCAACT
CCCTTGCATGTGAACTCCTGGATGTATTTTCCCGCATTGATCGCATCGTC
GCAGGTGCTGCCGTCGGCCATTTGAGGCTGGCACACCGCGATGAAATGGG
GACGCAGTCGGCCGATGGAGTACTTGGCTATATCCGTGGTCAGCTGGCTG
AGCACAGCGCCGAAGGCATAGATGCCGATCTTCTTGTAGCACTCGATCAT
CCAGTCGGGCAGTTCGTAGTTCATAAAGACGTACCTTCGACTGGTTGCAT
TGCCATTATCCTGCTTGGCCTTGTTCTGTGAAATGATGACCTCCACGATG
AATATCACGCCGACTGGTATCACAGCTCCGATGAAGTATAGCATCCAATT
CCGGACCGTAGAATCGTGGAACGGGTGCTTCAGTGACTCGTCATCGC
MXO02322.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8804-PB | 1140 | wun-RB | 359..1137 | 797..19 | 3870 | 99.8 | Minus |
| CG8804-PA | 903 | wun-RA | 122..900 | 797..19 | 3870 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun-RA | 1626 | CG8804-RA | 341..1119 | 797..19 | 3880 | 99.9 | Minus |
| wun-RB | 2026 | CG8804-RB | 741..1519 | 797..19 | 3880 | 99.9 | Minus |
| wun-RC | 1563 | CG8804-RC | 741..1408 | 797..130 | 3325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9403705..9403926 | 485..706 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 9402408..9402586 | 129..307 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 9402656..9402836 | 307..487 | 890 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9401038..9401149 | 19..130 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 9404307..9404398 | 706..797 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 22472833..22473048 | 366..151 | 210 | 73.1 | Minus |
| 2R | 25286936 | 2R | 9417435..9417540 | 266..161 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:42 has no hits.
MXO02322.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:18 Download gff for
MXO02322.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8804-PA | 122..903 | 15..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:44 Download gff for
MXO02322.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 741..1522 | 15..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:28 Download gff for
MXO02322.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 741..1522 | 15..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:28 Download gff for
MXO02322.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9401035..9401148 | 15..129 | 98 | <- | Plus |
| 2R | 9402409..9402585 | 130..306 | 100 | <- | Plus |
| 2R | 9402656..9402835 | 307..486 | 99 | <- | Plus |
| 2R | 9403707..9403925 | 487..705 | 100 | <- | Plus |
| 2R | 9404307..9404398 | 706..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:44 Download gff for
MXO02322.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5288540..5288653 | 15..129 | 98 | <- | Plus |
| arm_2R | 5289914..5290090 | 130..306 | 100 | <- | Plus |
| arm_2R | 5290161..5290340 | 307..486 | 99 | <- | Plus |
| arm_2R | 5291212..5291430 | 487..705 | 100 | <- | Plus |
| arm_2R | 5291812..5291903 | 706..797 | 100 | | Plus |
MXO02322.5prime Sequence
813 bp (695 high quality bases) assembled on 2007-01-19
> MXO02322.5prime
CAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGGGCTTGGAT
GTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTTTTCCTGCT
GGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTCACTGAAGC
ACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACTTCATCGGA
GCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATCATTTCACA
GAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAGGTACGTCT
TTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACAAGAAGATC
GGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACGGATATAGC
CAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGTGTGCCAGC
CTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATGCGGGAAAA
TACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCGCGCATGCT
CAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTTCACCTTCT
TCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGACCTGNCGG
GGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATCATGGTGGC
CTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCACTGGTCCA
ATGTGCTGGCAGGATCGCTTATTGGCTCCATAAACGCACTGGTCGTGGCC
AACTATGTCTCCG
MXO02322.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8804-PB | 1140 | wun-RB | 237..1042 | 8..813 | 3961 | 99.6 | Plus |
| CG8804-PA | 903 | wun-RA | 1..805 | 9..813 | 3956 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun-RA | 1626 | CG8804-RA | 219..1024 | 8..813 | 3989 | 99.6 | Plus |
| wun-RB | 2026 | CG8804-RB | 619..1424 | 8..813 | 3989 | 99.6 | Plus |
| wun-RC | 1563 | CG8804-RC | 619..1408 | 8..797 | 3909 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9403705..9403926 | 442..221 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 9402656..9402836 | 620..440 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9402408..9402586 | 798..620 | 854 | 98.3 | Minus |
| 2R | 25286936 | 2R | 9404307..9404459 | 221..69 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 9409213..9409274 | 69..8 | 310 | 100 | Minus |
| 2R | 25286936 | 2R | 9417435..9417540 | 661..766 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:53 has no hits.
MXO02322.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:18 Download gff for
MXO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8804-PB | 231..1042 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:22 Download gff for
MXO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 613..1424 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:12 Download gff for
MXO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun-RB | 613..1424 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:12 Download gff for
MXO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9401133..9401148 | 798..813 | 100 | <- | Minus |
| 2R | 9402409..9402585 | 621..797 | 98 | <- | Minus |
| 2R | 9402656..9402835 | 441..620 | 100 | <- | Minus |
| 2R | 9403707..9403925 | 222..440 | 100 | <- | Minus |
| 2R | 9404307..9404458 | 70..221 | 100 | <- | Minus |
| 2R | 9409213..9409280 | 1..69 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:22 Download gff for
MXO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5291812..5291963 | 70..221 | 100 | <- | Minus |
| arm_2R | 5296718..5296785 | 1..69 | 95 | | Minus |
| arm_2R | 5288638..5288653 | 798..813 | 100 | <- | Minus |
| arm_2R | 5289914..5290090 | 621..797 | 98 | <- | Minus |
| arm_2R | 5290161..5290340 | 441..620 | 100 | <- | Minus |
| arm_2R | 5291212..5291430 | 222..440 | 100 | <- | Minus |
