MXO02323.3prime Sequence
812 bp (796 high quality bases) assembled on 2007-01-19
> MXO02323.3prime
ATGGTCTAGAAAGCTTGCCATGCCGCCTTCGTTCTTGGAGCGCACGTCGT
CGATCTTGAGTATCATCTTGACGAGCTGCGTGGAGAGCAGAATCTGCTGC
TTCTTCGAGTGCAGCGACTCCACCACGTTATGGCTCTTCATGTCCGAATC
ACCCGACAGCATGCAGTCGACACCCAGGCTGGACTTCTTCTCGGCCACCT
GTCTGGCCTTCAGCTCCGACAACGTCTCGATGGGATGCAGGCCGCTGTTC
TCCGCCAGAGCCAGCGGAATGCTCTCCAGGGCCACGGAGAAGGCGCGGAA
GGCGTACTGCTCCAGCGTGGACAGTTGGTCGGCCTCCTTGGCCACAGCCA
ACGAGCAGCTAATCTCGGCAGCTCCACCACCGTAAACAATTCGCGAGTCC
TTCACAAGCGAACGCACCACGCAGATGGCATCGTGAATCGATCGCTTAGC
CTCCGCAATGATCATGGCGTTACCTCCACGCAAGAAGATGGTCACAGCCT
TGGAGTTTTTGCACTCCTCGATGACCAGCATCTTGTCCTTGGATGTTCCG
AATGCCATTTCGCGAACGAGTCCCGCAACACCTAGTTTCTCAGGCGTGAG
CTCTTCGAAACGCGGCACGATGCGTCCACCGGTGGCGATGGCAATCAGCT
CGATCTCCGGACCGCCAACCCAGCGCACGGCGGGCAGCTCCTGCTGAAGC
AACAGGTGGTTGGCCTCATCATCGAAGCCCCACTGGCAGATGGCAAGGGT
GGCGCCGGCGTCCTTCACCTGCTTGACCATCTGGGTGAACTTCTCCTGCT
CGTACTCGCGCA
MXO02323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8439-PA | 1629 | Cct5-RA | 833..1626 | 812..19 | 3945 | 99.8 | Minus |
CG8439-PB | 1539 | Cct5-RB | 743..1536 | 812..19 | 3945 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RB | 1754 | CG8439-RB | 758..1551 | 812..19 | 3955 | 99.9 | Minus |
Cct5-RA | 1948 | CG8439-RA | 952..1745 | 812..19 | 3955 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12176777..12177313 | 555..19 | 2670 | 99.8 | Minus |
2R | 25286936 | 2R | 12176461..12176718 | 812..555 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:58 has no hits.
MXO02323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:19 Download gff for
MXO02323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8439-PB | 744..1539 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:51 Download gff for
MXO02323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 953..1748 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:17 Download gff for
MXO02323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 953..1748 | 15..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:17 Download gff for
MXO02323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12176462..12176718 | 555..811 | 100 | -> | Minus |
2R | 12176778..12177316 | 15..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:51 Download gff for
MXO02323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8063967..8064223 | 555..811 | 100 | -> | Minus |
arm_2R | 8064283..8064821 | 15..554 | 99 | | Minus |
MXO02323.5prime Sequence
861 bp (762 high quality bases) assembled on 2007-01-19
> MXO02323.5prime
CAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACGAATATGGT
CGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGCATCACAGG
AACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGATCGCGTCCA
CCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCATGGTCAGT
CCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATCATGAAGCT
GATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCTGTCGCAGT
CACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCGTGCTGGCC
GGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGCATTCATCC
CATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGCCATCAAGC
AGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGAACAAGGAG
CCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATCGTGAACAA
GTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCTGAATGTGG
CCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGATCGAGACC
AAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGTGTCATCGT
TGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAGGAACGTCA
AGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAAAGACCAGG
CATAAGCTCGATGTTACCTCCGCGGAAGACTACCGGGCGCTGCGCGAGTA
CGAGCAGGAGA
MXO02323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8439-PA | 1629 | Cct5-RA | 1..853 | 9..861 | 4215 | 99.7 | Plus |
CG8439-PB | 1539 | Cct5-RB | 18..763 | 116..861 | 3680 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1948 | CG8439-RA | 119..972 | 8..861 | 4240 | 99.8 | Plus |
Cct5-RB | 1754 | CG8439-RB | 33..778 | 116..861 | 3700 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12175735..12176481 | 115..861 | 3705 | 99.7 | Plus |
2R | 25286936 | 2R | 12174920..12175028 | 8..116 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:34:48 has no hits.
MXO02323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:19 Download gff for
MXO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8439-PA | 1..852 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:22 Download gff for
MXO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 119..971 | 8..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:46 Download gff for
MXO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 119..971 | 8..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:46 Download gff for
MXO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12174920..12175028 | 8..116 | 100 | -> | Plus |
2R | 12175737..12176480 | 117..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:22 Download gff for
MXO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8062425..8062533 | 8..116 | 100 | -> | Plus |
arm_2R | 8063242..8063985 | 117..860 | 99 | | Plus |