Clone MXO02323 Report

Search the DGRC for MXO02323

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:23
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCct5-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02323.3prime Sequence

812 bp (796 high quality bases) assembled on 2007-01-19

> MXO02323.3prime
ATGGTCTAGAAAGCTTGCCATGCCGCCTTCGTTCTTGGAGCGCACGTCGT
CGATCTTGAGTATCATCTTGACGAGCTGCGTGGAGAGCAGAATCTGCTGC
TTCTTCGAGTGCAGCGACTCCACCACGTTATGGCTCTTCATGTCCGAATC
ACCCGACAGCATGCAGTCGACACCCAGGCTGGACTTCTTCTCGGCCACCT
GTCTGGCCTTCAGCTCCGACAACGTCTCGATGGGATGCAGGCCGCTGTTC
TCCGCCAGAGCCAGCGGAATGCTCTCCAGGGCCACGGAGAAGGCGCGGAA
GGCGTACTGCTCCAGCGTGGACAGTTGGTCGGCCTCCTTGGCCACAGCCA
ACGAGCAGCTAATCTCGGCAGCTCCACCACCGTAAACAATTCGCGAGTCC
TTCACAAGCGAACGCACCACGCAGATGGCATCGTGAATCGATCGCTTAGC
CTCCGCAATGATCATGGCGTTACCTCCACGCAAGAAGATGGTCACAGCCT
TGGAGTTTTTGCACTCCTCGATGACCAGCATCTTGTCCTTGGATGTTCCG
AATGCCATTTCGCGAACGAGTCCCGCAACACCTAGTTTCTCAGGCGTGAG
CTCTTCGAAACGCGGCACGATGCGTCCACCGGTGGCGATGGCAATCAGCT
CGATCTCCGGACCGCCAACCCAGCGCACGGCGGGCAGCTCCTGCTGAAGC
AACAGGTGGTTGGCCTCATCATCGAAGCCCCACTGGCAGATGGCAAGGGT
GGCGCCGGCGTCCTTCACCTGCTTGACCATCTGGGTGAACTTCTCCTGCT
CGTACTCGCGCA

MXO02323.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8439-PA 1629 Cct5-RA 833..1626 812..19 3945 99.8 Minus
CG8439-PB 1539 Cct5-RB 743..1536 812..19 3945 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RB 1754 CG8439-RB 758..1551 812..19 3955 99.9 Minus
Cct5-RA 1948 CG8439-RA 952..1745 812..19 3955 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12176777..12177313 555..19 2670 99.8 Minus
2R 25286936 2R 12176461..12176718 812..555 1290 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:05:58 has no hits.

MXO02323.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:19 Download gff for MXO02323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8439-PB 744..1539 15..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:51 Download gff for MXO02323.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 953..1748 15..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:17 Download gff for MXO02323.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 953..1748 15..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:17 Download gff for MXO02323.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12176462..12176718 555..811 100 -> Minus
2R 12176778..12177316 15..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:51 Download gff for MXO02323.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8063967..8064223 555..811 100 -> Minus
arm_2R 8064283..8064821 15..554 99   Minus

MXO02323.5prime Sequence

861 bp (762 high quality bases) assembled on 2007-01-19

> MXO02323.5prime
CAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACGAATATGGT
CGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGCATCACAGG
AACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGATCGCGTCCA
CCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCATGGTCAGT
CCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATCATGAAGCT
GATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCTGTCGCAGT
CACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCGTGCTGGCC
GGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGCATTCATCC
CATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGCCATCAAGC
AGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGAACAAGGAG
CCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATCGTGAACAA
GTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCTGAATGTGG
CCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGATCGAGACC
AAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGTGTCATCGT
TGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAGGAACGTCA
AGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAAAGACCAGG
CATAAGCTCGATGTTACCTCCGCGGAAGACTACCGGGCGCTGCGCGAGTA
CGAGCAGGAGA

MXO02323.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8439-PA 1629 Cct5-RA 1..853 9..861 4215 99.7 Plus
CG8439-PB 1539 Cct5-RB 18..763 116..861 3680 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1948 CG8439-RA 119..972 8..861 4240 99.8 Plus
Cct5-RB 1754 CG8439-RB 33..778 116..861 3700 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175735..12176481 115..861 3705 99.7 Plus
2R 25286936 2R 12174920..12175028 8..116 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:34:48 has no hits.

MXO02323.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:19 Download gff for MXO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8439-PA 1..852 9..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:22 Download gff for MXO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 119..971 8..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:46 Download gff for MXO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 119..971 8..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:46 Download gff for MXO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12174920..12175028 8..116 100 -> Plus
2R 12175737..12176480 117..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:22 Download gff for MXO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062425..8062533 8..116 100 -> Plus
arm_2R 8063242..8063985 117..860 99   Plus