MXO02325.3prime Sequence
465 bp (464 high quality bases) assembled on 2007-01-19
> MXO02325.3prime
ATGGTCTAGAAAGCTTGCCATGAGTATCAGAGCAATCTCCTCCGGCTGCA
TCGATGGACAGCGCCAATTGTAGAGGTAGTACTGCAGGTTTCCATCCCCG
GCTCCGAATTTTAGCGGTGCAAAGTACTTCTTGTTCTCCATGAGGTCGAG
GGCATTGTACACGTCCATCTGGACATTGCGGGCCGAGATCAGTGCATCGT
TCATCAGGTCCAGCCACGGGGTCTTTGTAGACACATTATAGAACGAATAT
GCGGCACGAACCGTCTTATGCACCGGATGGTGCATCACGGACGATGGCAG
GCAGTAGTAGCTAGTCAGATCAGTGATGTTGCCCTTTTCGTCGGCAACCA
CGAAGCAGTCAATAATACCTTCTTTGGGGGTAAACCCCCGACGAAACTCC
TCCTTGCTGAACACCGGGATCAACTGAAAGCGCTTTAGGAAGTCCCCCCG
CAGCTTGTGGGCCTT
MXO02325.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7436-PA | 1419 | Nmt-RA | 1049..1416 | 386..19 | 1765 | 99.1 | Minus |
| CG7436-PA | 1419 | Nmt-RA | 970..1045 | 465..390 | 230 | 92.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 1072..1518 | 465..19 | 2055 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176429..8176875 | 19..465 | 2055 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:49 has no hits.
MXO02325.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:20 Download gff for
MXO02325.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7436-PA | 970..1419 | 18..465 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:15 Download gff for
MXO02325.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 1072..1518 | 19..465 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:35 Download gff for
MXO02325.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 1072..1518 | 19..465 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:35 Download gff for
MXO02325.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176429..8176875 | 19..465 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:15 Download gff for
MXO02325.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8169529..8169975 | 19..465 | 97 | | Plus |
MXO02325.5prime Sequence
271 bp (262 high quality bases) assembled on 2007-01-19
> MXO02325.5prime
CAGTCGACATGCCGAACGAAAACGCAGAGGACCTCTCGGGTCAAGAGCTA
AAGCAGAAGGCCAAGGAGGTGGCCGACGCATCGGAGGCAATGCTCGAAAA
GGTTGTTGCCGGCTTAAATATCCAGGACACGGCATCGACGAATGCAGCAG
GAAACGAGGATGCGGAGCAGCCTGATGGTGCCAAGAATGAGGCTTCAGTG
TCTGCGAATGCAAGCAAACAGGCCTTGCTACAAGCCGTTTCCGATGCTAT
GGCCAGTACCCGTCAGATGGC
MXO02325.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7436-PA | 1419 | Nmt-RA | 1..263 | 9..271 | 1290 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 103..365 | 9..271 | 1300 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8178122..8178327 | 214..9 | 1030 | 100 | Minus |
| 3L | 28110227 | 3L | 8177582..8177639 | 271..214 | 275 | 98.3 | Minus |
Blast to na_te.dros performed 2014-11-28 22:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 946..1003 | 5..61 | 107 | 67.2 | Plus |
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 2157..2190 | 73..107 | 100 | 80 | Plus |
MXO02325.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:21 Download gff for
MXO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7436-PA | 1..263 | 9..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:59 Download gff for
MXO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..365 | 9..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:41 Download gff for
MXO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..365 | 9..271 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:41 Download gff for
MXO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8177582..8177639 | 214..271 | 98 | <- | Minus |
| 3L | 8178123..8178327 | 9..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:59 Download gff for
MXO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8170682..8170739 | 214..271 | 98 | <- | Minus |
| arm_3L | 8171223..8171427 | 9..213 | 100 | | Minus |
