MXO02328.3prime Sequence
708 bp (653 high quality bases) assembled on 2007-01-19
> MXO02328.3prime
ATGGTCTAGAAAGCTTGCGCCGAGGCTGTCCACGCACACAGTCTTCAGGG
TCTTGCCGGCAATCGTGGTCTTATACTGCTCCGGTAAAGCCAACTCGGTA
TAATCGCCGCTGTCGTCGGGCAACAGGATGTTCATCTCCGAGGACTTGGA
GTTGACGATCTCCACGCCCAGCGAGTCCTTGGACAGATACATCTGGCAGC
CGTCGGTCTTGTCGATCGATACCGTCGGCACCGAGCCGAGCACCTGCATC
TGCACGCTCTGGCAGTTGACGAACTCCACGGAGGCCACCACGGAATCGAA
CAGCAGGGAGCACTTCTTGCAGGAGTCGAAGACGATGTTGTTCACCTTGC
CCTTGACGGTCAGAGTGGATCCCTCACACTTGAACACATACACCACGTTG
TTCATCTCGGCGTTCTCCACCAACAGCCCGGTGTTGTTCTTCTGGTACTC
GATGATCCACTTCTTTCCGTCGCGCTCGAAAACGGGCGCCTTGGCTTGCG
CAGCTGATGGAGCAGCAACGGCCTTGCTGCCGCCCGACTGGGCTGGCGAT
TTGAACGGAGCCGGTCCAGTGCGTAGAGATGGATTTTTATGGGTCTGCAT
GTCGCCAGTGACCTTCTTCAAGCCCTTGGTGATGTCGGCACCCTGGTTGA
TCTGGGCGAAGAGGGCGCTGCGATCATCTCCAGCGCTATCCAGCTTGAAG
GGACTCAG
MXO02328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33979-PA | 1275 | capt-RA | 593..1272 | 698..19 | 3375 | 99.8 | Minus |
CG33979-PB | 2352 | capt-RB | 1670..2349 | 698..19 | 3375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 1376..2065 | 708..19 | 3405 | 99.6 | Minus |
capt-RA | 2040 | CG33979-RA | 994..1683 | 708..19 | 3405 | 99.6 | Minus |
capt-RB | 3049 | CG33979-RB | 2003..2692 | 708..19 | 3405 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152177..1152701 | 100..624 | 2625 | 100 | Plus |
2L | 23513712 | 2L | 1152035..1152115 | 19..99 | 405 | 100 | Plus |
2L | 23513712 | 2L | 1152770..1152855 | 623..708 | 385 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:28 has no hits.
MXO02328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:22 Download gff for
MXO02328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1660..2352 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:35 Download gff for
MXO02328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 2003..2696 | 14..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:39 Download gff for
MXO02328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 2003..2696 | 14..708 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:39 Download gff for
MXO02328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1152771..1152855 | 624..708 | 96 | | Plus |
2L | 1152031..1152115 | 14..99 | 97 | <- | Plus |
2L | 1152177..1152700 | 100..623 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:35 Download gff for
MXO02328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152771..1152855 | 624..708 | 96 | | Plus |
arm_2L | 1152031..1152115 | 14..99 | 97 | <- | Plus |
arm_2L | 1152177..1152700 | 100..623 | 100 | <- | Plus |
MXO02328.5prime Sequence
642 bp (557 high quality bases) assembled on 2007-01-19
> MXO02328.5prime
CAGTCGACATGAGTGTCGCCGGATTCCAGGACATTGTGGCGGGTCCGCTG
AGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTGGCGCAGCA
TGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTACGTGACGC
TGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGGAGCTTCTG
AAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGCGAGAAGCA
CCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGAAAGCATTC
CCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCTATGTCAAG
GAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTCACGGAGTG
GAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTGGGTGCAGA
CGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCACGGGCTTG
GTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCGCCACCACC
GCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCTGAGTGCCC
TCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCTGCTTCG
MXO02328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33979-PB | 2352 | capt-RB | 1076..1704 | 7..635 | 3095 | 99.6 | Plus |
CG33979-PA | 1275 | capt-RA | 1..627 | 9..635 | 3085 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 792..1427 | 7..642 | 3120 | 99.4 | Plus |
capt-RA | 2040 | CG33979-RA | 410..1045 | 7..642 | 3120 | 99.4 | Plus |
capt-RB | 3049 | CG33979-RB | 1419..2054 | 7..642 | 3120 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152804..1153319 | 642..127 | 2535 | 99.4 | Minus |
2L | 23513712 | 2L | 1153386..1153506 | 127..7 | 590 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:57 has no hits.
MXO02328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:24 Download gff for
MXO02328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1071..1711 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:42 Download gff for
MXO02328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1414..2054 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:46 Download gff for
MXO02328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1414..2054 | 1..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:46 Download gff for
MXO02328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1153386..1153511 | 1..127 | 97 | | Minus |
2L | 1152804..1153318 | 128..642 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:42 Download gff for
MXO02328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152804..1153318 | 128..642 | 99 | <- | Minus |
arm_2L | 1153386..1153511 | 1..127 | 97 | | Minus |