Clone MXO02328 Report

Search the DGRC for MXO02328

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:28
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcapt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02328.3prime Sequence

708 bp (653 high quality bases) assembled on 2007-01-19

> MXO02328.3prime
ATGGTCTAGAAAGCTTGCGCCGAGGCTGTCCACGCACACAGTCTTCAGGG
TCTTGCCGGCAATCGTGGTCTTATACTGCTCCGGTAAAGCCAACTCGGTA
TAATCGCCGCTGTCGTCGGGCAACAGGATGTTCATCTCCGAGGACTTGGA
GTTGACGATCTCCACGCCCAGCGAGTCCTTGGACAGATACATCTGGCAGC
CGTCGGTCTTGTCGATCGATACCGTCGGCACCGAGCCGAGCACCTGCATC
TGCACGCTCTGGCAGTTGACGAACTCCACGGAGGCCACCACGGAATCGAA
CAGCAGGGAGCACTTCTTGCAGGAGTCGAAGACGATGTTGTTCACCTTGC
CCTTGACGGTCAGAGTGGATCCCTCACACTTGAACACATACACCACGTTG
TTCATCTCGGCGTTCTCCACCAACAGCCCGGTGTTGTTCTTCTGGTACTC
GATGATCCACTTCTTTCCGTCGCGCTCGAAAACGGGCGCCTTGGCTTGCG
CAGCTGATGGAGCAGCAACGGCCTTGCTGCCGCCCGACTGGGCTGGCGAT
TTGAACGGAGCCGGTCCAGTGCGTAGAGATGGATTTTTATGGGTCTGCAT
GTCGCCAGTGACCTTCTTCAAGCCCTTGGTGATGTCGGCACCCTGGTTGA
TCTGGGCGAAGAGGGCGCTGCGATCATCTCCAGCGCTATCCAGCTTGAAG
GGACTCAG

MXO02328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33979-PA 1275 capt-RA 593..1272 698..19 3375 99.8 Minus
CG33979-PB 2352 capt-RB 1670..2349 698..19 3375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RC 2422 CG33979-RC 1376..2065 708..19 3405 99.6 Minus
capt-RA 2040 CG33979-RA 994..1683 708..19 3405 99.6 Minus
capt-RB 3049 CG33979-RB 2003..2692 708..19 3405 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152177..1152701 100..624 2625 100 Plus
2L 23513712 2L 1152035..1152115 19..99 405 100 Plus
2L 23513712 2L 1152770..1152855 623..708 385 96.5 Plus
Blast to na_te.dros performed on 2014-11-28 22:27:28 has no hits.

MXO02328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:22 Download gff for MXO02328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33979-PB 1660..2352 15..708 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:35 Download gff for MXO02328.3prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 2003..2696 14..708 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:39 Download gff for MXO02328.3prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 2003..2696 14..708 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:39 Download gff for MXO02328.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1152771..1152855 624..708 96   Plus
2L 1152031..1152115 14..99 97 <- Plus
2L 1152177..1152700 100..623 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:35 Download gff for MXO02328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1152771..1152855 624..708 96   Plus
arm_2L 1152031..1152115 14..99 97 <- Plus
arm_2L 1152177..1152700 100..623 100 <- Plus

MXO02328.5prime Sequence

642 bp (557 high quality bases) assembled on 2007-01-19

> MXO02328.5prime
CAGTCGACATGAGTGTCGCCGGATTCCAGGACATTGTGGCGGGTCCGCTG
AGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTGGCGCAGCA
TGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTACGTGACGC
TGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGGAGCTTCTG
AAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGCGAGAAGCA
CCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGAAAGCATTC
CCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCTATGTCAAG
GAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTCACGGAGTG
GAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTGGGTGCAGA
CGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCACGGGCTTG
GTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCGCCACCACC
GCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCTGAGTGCCC
TCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCTGCTTCG

MXO02328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33979-PB 2352 capt-RB 1076..1704 7..635 3095 99.6 Plus
CG33979-PA 1275 capt-RA 1..627 9..635 3085 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RC 2422 CG33979-RC 792..1427 7..642 3120 99.4 Plus
capt-RA 2040 CG33979-RA 410..1045 7..642 3120 99.4 Plus
capt-RB 3049 CG33979-RB 1419..2054 7..642 3120 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152804..1153319 642..127 2535 99.4 Minus
2L 23513712 2L 1153386..1153506 127..7 590 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 19:25:57 has no hits.

MXO02328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:24 Download gff for MXO02328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33979-PB 1071..1711 1..642 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:42 Download gff for MXO02328.5prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1414..2054 1..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:46 Download gff for MXO02328.5prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1414..2054 1..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:46 Download gff for MXO02328.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1153386..1153511 1..127 97   Minus
2L 1152804..1153318 128..642 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:42 Download gff for MXO02328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1152804..1153318 128..642 99 <- Minus
arm_2L 1153386..1153511 1..127 97   Minus