MXO02330.3prime Sequence
457 bp (456 high quality bases) assembled on 2007-01-19
> MXO02330.3prime
ATGGTCTAGAAAGCTTGCATTCCAGGTGCCAAACTTGAGACGCAATTGCT
CCAGGAACACAAAGGTGATGATCGTGTGTGGACCCAGACGCACAAATGCC
GGCACATAGCCCTTAAAGAAGCCGAGGGGACCCAGTTTCGCCGTGTGCTT
CACGATGTCCCACAGGCCATTGAACTCGCCGGGTTTCGCGTTCATGGACC
GCGTCTTCAGCACATCCAACGGTTGGGTGAGAGTGGTGGCTATCGTTCCG
GCCACCAGGGAGGCGGTGAAGTGCGTAACCAGGTTGTCTTGGAAATAAGG
CGTGGCCAGCAGGTAGATCTTCGTCTGTTTTTAAAATGCAATTTCGCCCA
CCGTCATCAGGGAGCCACAAAAAGACGCTTTTTTTTCCCCCCCCCCAAGG
AANNNGAAGGNCNGAAAAAAAAAAAAAGGGGGGAGGNGNNNGAAGGNANG
ANNGGAG
MXO02330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8790-PB | 843 | CG8790-RB | 532..835 | 327..24 | 1520 | 100 | Minus |
| CG8790-PA | 843 | CG8790-RA | 532..835 | 327..24 | 1520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic1-RC | 1587 | CG8790-RC | 657..999 | 361..19 | 1610 | 98 | Minus |
| Dic1-RA | 1400 | CG8790-RA | 657..999 | 361..19 | 1610 | 98 | Minus |
| Dic1-RB | 1555 | CG8790-RB | 812..1154 | 361..19 | 1610 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13368348..13368690 | 361..19 | 1610 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:54 has no hits.
MXO02330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:25 Download gff for
MXO02330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8790-PA | 511..843 | 18..348 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:34 Download gff for
MXO02330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic1-RB | 825..1158 | 13..348 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:39 Download gff for
MXO02330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic1-RB | 825..1158 | 13..348 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:39 Download gff for
MXO02330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13368361..13368694 | 13..348 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:34 Download gff for
MXO02330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9194083..9194416 | 13..348 | 97 | | Minus |
MXO02330.5prime Sequence
724 bp (661 high quality bases) assembled on 2007-01-19
> MXO02330.5prime
CAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCTTTGGCGGA
TTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGACCTCATCAA
GGTCACGCTGCAAACGCAACAGGGTCACCTGTCGGTGGCCCAGTTGATCC
CTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACGGCCTCTCC
GCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTCGGGGTGTA
TGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGGCAAGGTGG
CCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAACTCCGGCT
GACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCGCCGCAACA
ACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGTCTACCGCC
AGGAGGGATTCAAGCAACTCTTTTCTGGAGCCACCGCAGCGACTGCCCGT
GGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAGACGAAGAT
CTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGATTACGCACTTCA
CCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCCAACCGTTG
GATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAGTTCAATGG
CCTGTGGGACATCGTGAAGCACAC
MXO02330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8790-PB | 843 | CG8790-RB | 1..716 | 9..724 | 3505 | 99.5 | Plus |
| CG8790-PA | 843 | CG8790-RA | 1..716 | 9..724 | 3505 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic1-RC | 1587 | CG8790-RC | 160..875 | 9..724 | 3535 | 99.6 | Plus |
| Dic1-RA | 1400 | CG8790-RA | 160..875 | 9..724 | 3535 | 99.6 | Plus |
| Dic1-RB | 1555 | CG8790-RB | 315..1030 | 9..724 | 3535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13367761..13368161 | 9..409 | 1990 | 99.8 | Plus |
| 3R | 32079331 | 3R | 13368252..13368566 | 410..724 | 1545 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:24 has no hits.
MXO02330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:25 Download gff for
MXO02330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8790-PA | 1..716 | 9..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:31 Download gff for
MXO02330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic1-RB | 307..1030 | 1..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:00 Download gff for
MXO02330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic1-RB | 307..1030 | 1..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:00 Download gff for
MXO02330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13368252..13368566 | 410..724 | 99 | | Plus |
| 3R | 13367753..13368161 | 1..409 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:31 Download gff for
MXO02330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9193475..9193883 | 1..409 | 98 | -> | Plus |
| arm_3R | 9193974..9194288 | 410..724 | 99 | | Plus |
