MXO02332.3prime Sequence
807 bp (693 high quality bases) assembled on 2007-01-19
> MXO02332.3prime
ATGGTCTAGAAAGCTTGCGGCCGCGGTGGTCTGCTGTGGTTCCTGGGTGG
TGCTGGTGGAGGCGACAGCCGACGATTCCGGCGCCTTTTCGTTGAGCGCC
AGCCAGGGACATCGCTTCTGCAGCTCCATGCGGTATCTGGGATGACTTAT
GGCGTACACGAACGGATCGATGCAGGCCACCATTTTGCAGGCACAGGCGG
GAATCATTGTGGCTCCGGGCGTCAAAAGGGTCTTATCCCCAAAGGCGCCA
ATCAGCGACATAACTCCGTACGGCGTCCACGAGCAAAAGAACAGGAAGCA
TATGGTGATGGCCGCTTTGGCTATCCGGATTTCCGCCGTCTCCTTGTTTT
TGTCCACATTCGAACGCAGCGATTCCACGTTCTTCTTCTTGGCCTGATCC
CGCAGTGCTTTCTCGTGGCTAAAGACATGGCCCACAATCTGGGAGTAGTA
GTACGTGATCATCGTGGTGGGACACACGAAGCTGAAGAAGAAGATGCAGG
CCACAAAGAGTCGCGTATCGAAGTTATCGGTGAGATAGTCAAAGGTGCAG
GATGTCAGATATCCCTCCGGCACAAAACGGCCCCAAGTCTCCGTGTAGCA
GGCAACCACCCATGGAGTGGCGTACATGTAGATGAATATGATCATGGCAA
TGGCCTTGCCATGCGTCATCTTGCCCTCCATGGGTCGAGTGATCACATTG
AATCGATCGTAGGCTATAAACGCATTGGTGGCACCGGCAGCGATTCCCGT
ATAGGAGCCAATGATTCCAAAGATCTGGCATCCCAGATGACCCAGCGCAT
ATCCCTG
MXO02332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10888-PA | 1152 | Rh3-RA | 361..1145 | 807..23 | 3900 | 99.8 | Minus |
| CG9668-PA | 1137 | Rh4-RA | 703..869 | 453..287 | 285 | 86.8 | Minus |
| CG9668-PA | 1137 | Rh4-RA | 965..1057 | 191..99 | 215 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh3-RA | 1391 | CG10888-RA | 385..1173 | 807..19 | 3915 | 99.7 | Minus |
| Rh4-RA | 1349 | CG9668-RA | 440..1118 | 763..85 | 1200 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20081278..20082066 | 19..807 | 3915 | 99.7 | Plus |
| 3L | 28110227 | 3L | 16852758..16853240 | 85..567 | 1155 | 82.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:01 has no hits.
MXO02332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:26 Download gff for
MXO02332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10888-PA | 361..1152 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:25 Download gff for
MXO02332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 385..1176 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:15 Download gff for
MXO02332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 385..1176 | 15..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:15 Download gff for
MXO02332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20081275..20082066 | 15..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:25 Download gff for
MXO02332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15906997..15907788 | 15..807 | 99 | | Plus |
MXO02332.5prime Sequence
327 bp (323 high quality bases) assembled on 2007-01-19
> MXO02332.5prime
CAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTGGCAACGTG
TCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACGCGTCTGCT
GGGCTGGAATGTGCCNCCNNANNANCTNCNNCNCNTTCCCCACCCCTCCC
TNNCTTNCCCCNACCCNCCCAAATCCATAAACTACCTGCTGNNCACACTC
TACATCTTCTTCACCCTAATCTCAATNCTCTCCAATACACTCCTAATTTN
NCTCTTCTCCTCANCCAAATCCCTNCAAACTCCCTCCAATATACTCATCA
TCAATCTNACCTTCTNCAACTTCATCA
MXO02332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10888-PA | 1152 | Rh3-RA | 1..107 | 9..115 | 535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh3-RA | 1391 | CG10888-RA | 24..341 | 8..325 | 865 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20082110..20082427 | 325..8 | 865 | 82.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:00 has no hits.
MXO02332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:27 Download gff for
MXO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10888-PA | 1..107 | 9..115 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:46 Download gff for
MXO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 14..131 | 1..115 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:26 Download gff for
MXO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh3-RA | 14..131 | 1..115 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:26 Download gff for
MXO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20082320..20082432 | 1..115 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:46 Download gff for
MXO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15908042..15908154 | 1..115 | 96 | | Minus |
