MXO02333.3prime Sequence
705 bp (552 high quality bases) assembled on 2007-01-19
> MXO02333.3prime
ATGGTCTAGAAAGCTTGCGCCCTCCTGCCCAAAGTCCTCTGTGAATTTGC
GCAGCTTCTTCAGATCGTCTTCGTTGACGGTCGGTTTCGTGCGGGACAAG
GACTTCAGCATGTCGCGCATGGTCACGGGCGGTTCGAAGAGCTTGTCGCT
GGGCACATCCATCCAGTTCATCTCGACGGCGCCCTGGTCGCCAGGTGAGC
ACGGAACCAGCAAATCGTTGACAATCTCCTCGTGGTTGGTGGGACTCGGA
CCGGATACCCGCTTGAAATGCGTGGCGGTCTGCACTTTCCTCACGGGTTC
CATCAGCGCATCGCGCACAACGATTGATATATCCGCGCCAGAGTAGCCCT
CGGTTTTGCCGGCCAACTCCTTGAGATCCTGCTCGGCGAGCACGTGCGTG
GTGTTGCCCAGATGGATCTTGAACATGACGAGGCGGGCATGCGCCTCCGG
CAGCGGAATGTAGATGCGCTTCTCGAATCGACGGCGAATGGCCGAGTCGA
GGACCCACGGTATGTTTGTGGCGCCGAGAACGAGAATGCCATCGGTGTCA
TTGCCCACGCCCTGCATCTGCACCAGAAACTCGGTCTTGATGCGTCGCAC
GCTGTCGTTCTCGTTGTCCGATCTCGCCGAGCACATCGAATCGATCTCGT
CCATGAAGATAATGGAGGGCTTGTGCTGGCGGGCCAGTTCGAATATATTT
CTTGA
MXO02333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6842-PA | 1329 | CG6842-RA | 652..1326 | 693..19 | 3325 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 805..1490 | 705..19 | 3350 | 99.3 | Minus |
Vps4-RA | 2031 | CG6842-RA | 805..1490 | 705..19 | 3350 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17909323..17909669 | 693..347 | 1705 | 99.4 | Minus |
X | 23542271 | X | 17909780..17910009 | 347..118 | 1150 | 100 | Minus |
X | 23542271 | X | 17910077..17910176 | 118..19 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:33:31 has no hits.
MXO02333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:27 Download gff for
MXO02333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 642..1329 | 18..704 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:06 Download gff for
MXO02333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 806..1490 | 19..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:21 Download gff for
MXO02333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 806..1490 | 19..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:21 Download gff for
MXO02333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17909313..17909669 | 347..704 | 98 | -> | Minus |
X | 17909781..17910009 | 118..346 | 100 | -> | Minus |
X | 17910078..17910176 | 19..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:06 Download gff for
MXO02333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17803346..17803702 | 347..704 | 98 | -> | Minus |
arm_X | 17803814..17804042 | 118..346 | 100 | -> | Minus |
arm_X | 17804111..17804209 | 19..117 | 100 | | Minus |
MXO02333.5prime Sequence
712 bp (710 high quality bases) assembled on 2007-01-19
> MXO02333.5prime
CAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCGATCTGGTG
ACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAGGCACTGCG
TCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAAATATGAGG
CACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCCTGCAGTAT
TTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGCAAAAAGAA
ACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAAGGACAAAA
AGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGAAGAAGCTG
CAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAGGTTCAGTG
GTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAAGGAGGCCG
TTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGCGGATTCCG
TGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAATCCTATCT
GGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTTCTCGGTGT
CCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGAAGCTGGTC
AAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATTATCTTCAT
TGACGAGATCGA
MXO02333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6842-PA | 1329 | CG6842-RA | 1..704 | 9..712 | 3520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 164..868 | 8..712 | 3525 | 100 | Plus |
Vps4-RA | 2031 | CG6842-RA | 164..868 | 8..712 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17908808..17909375 | 145..712 | 2840 | 100 | Plus |
X | 23542271 | X | 17908577..17908713 | 8..144 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:51 has no hits.
MXO02333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:28 Download gff for
MXO02333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 1..703 | 9..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:45 Download gff for
MXO02333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 157..867 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:26 Download gff for
MXO02333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 157..867 | 1..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:26 Download gff for
MXO02333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17908571..17908713 | 1..144 | 97 | -> | Plus |
X | 17908808..17909374 | 145..711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:45 Download gff for
MXO02333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17802604..17802746 | 1..144 | 97 | -> | Plus |
arm_X | 17802841..17803407 | 145..711 | 100 | | Plus |