Clone MXO02333 Report

Search the DGRC for MXO02333

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:33
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptVps4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02333.3prime Sequence

705 bp (552 high quality bases) assembled on 2007-01-19

> MXO02333.3prime
ATGGTCTAGAAAGCTTGCGCCCTCCTGCCCAAAGTCCTCTGTGAATTTGC
GCAGCTTCTTCAGATCGTCTTCGTTGACGGTCGGTTTCGTGCGGGACAAG
GACTTCAGCATGTCGCGCATGGTCACGGGCGGTTCGAAGAGCTTGTCGCT
GGGCACATCCATCCAGTTCATCTCGACGGCGCCCTGGTCGCCAGGTGAGC
ACGGAACCAGCAAATCGTTGACAATCTCCTCGTGGTTGGTGGGACTCGGA
CCGGATACCCGCTTGAAATGCGTGGCGGTCTGCACTTTCCTCACGGGTTC
CATCAGCGCATCGCGCACAACGATTGATATATCCGCGCCAGAGTAGCCCT
CGGTTTTGCCGGCCAACTCCTTGAGATCCTGCTCGGCGAGCACGTGCGTG
GTGTTGCCCAGATGGATCTTGAACATGACGAGGCGGGCATGCGCCTCCGG
CAGCGGAATGTAGATGCGCTTCTCGAATCGACGGCGAATGGCCGAGTCGA
GGACCCACGGTATGTTTGTGGCGCCGAGAACGAGAATGCCATCGGTGTCA
TTGCCCACGCCCTGCATCTGCACCAGAAACTCGGTCTTGATGCGTCGCAC
GCTGTCGTTCTCGTTGTCCGATCTCGCCGAGCACATCGAATCGATCTCGT
CCATGAAGATAATGGAGGGCTTGTGCTGGCGGGCCAGTTCGAATATATTT
CTTGA

MXO02333.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6842-PA 1329 CG6842-RA 652..1326 693..19 3325 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-RB 2411 CG6842-RB 805..1490 705..19 3350 99.3 Minus
Vps4-RA 2031 CG6842-RA 805..1490 705..19 3350 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17909323..17909669 693..347 1705 99.4 Minus
X 23542271 X 17909780..17910009 347..118 1150 100 Minus
X 23542271 X 17910077..17910176 118..19 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:33:31 has no hits.

MXO02333.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:27 Download gff for MXO02333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6842-PA 642..1329 18..704 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:06 Download gff for MXO02333.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 806..1490 19..704 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:21 Download gff for MXO02333.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 806..1490 19..704 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:21 Download gff for MXO02333.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17909313..17909669 347..704 98 -> Minus
X 17909781..17910009 118..346 100 -> Minus
X 17910078..17910176 19..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:06 Download gff for MXO02333.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17803346..17803702 347..704 98 -> Minus
arm_X 17803814..17804042 118..346 100 -> Minus
arm_X 17804111..17804209 19..117 100   Minus

MXO02333.5prime Sequence

712 bp (710 high quality bases) assembled on 2007-01-19

> MXO02333.5prime
CAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCGATCTGGTG
ACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAGGCACTGCG
TCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAAATATGAGG
CACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCCTGCAGTAT
TTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGCAAAAAGAA
ACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAAGGACAAAA
AGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGAAGAAGCTG
CAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAGGTTCAGTG
GTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAAGGAGGCCG
TTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGCGGATTCCG
TGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAATCCTATCT
GGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTTCTCGGTGT
CCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGAAGCTGGTC
AAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATTATCTTCAT
TGACGAGATCGA

MXO02333.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6842-PA 1329 CG6842-RA 1..704 9..712 3520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-RB 2411 CG6842-RB 164..868 8..712 3525 100 Plus
Vps4-RA 2031 CG6842-RA 164..868 8..712 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17908808..17909375 145..712 2840 100 Plus
X 23542271 X 17908577..17908713 8..144 685 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:45:51 has no hits.

MXO02333.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:28 Download gff for MXO02333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6842-PA 1..703 9..711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:45 Download gff for MXO02333.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 157..867 1..711 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:26 Download gff for MXO02333.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 157..867 1..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:26 Download gff for MXO02333.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17908571..17908713 1..144 97 -> Plus
X 17908808..17909374 145..711 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:45 Download gff for MXO02333.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17802604..17802746 1..144 97 -> Plus
arm_X 17802841..17803407 145..711 100   Plus