MXO02334.3prime Sequence
810 bp (763 high quality bases) assembled on 2007-01-19
> MXO02334.3prime
ATGGTCTAGAAAGCTTGCAGCCCTAACGTTGTTTTCTATCCAGTTCAGAT
ACGCTTCAACCCTTGTGTACACGCCGGGCCATCCTTTTAGGCCACAGGGC
GTGGGTCCGTAGGAGACCACACCAGCAATGTAGTAGTTTGAGTTTCCATT
GGAGTAGTCCTCGAGCAGAAGGGGGCCACCCGAGTCCCCGCGACAGGAAT
CAACCCCCTCAACTCCGCCGGCGCACATCTGTTTGGTGGTGACAGTCCTT
CTTTGGGTGGCGTATCTTTGGTTGCATTCGGACGTCGGTACCGTATCCAA
CTCAGCCTTCAGCTTGATATTGGACGTAAAATTTGTCTCCGTGCGACCCC
ACCCTGCCACCACCACCTTTCGGCCAAGGAATATATTGTTGTGCTGGGAC
GCTAAAGTGGGCAGACATACTGGTAATATGAAGTCGCTGTACTGAACCTC
GTCCCGCAATCGCAGCAACGCAATGTCATTTAGCTGGTCCCGTGAGTTTC
CCGGGTACTGCGGGTGCGGAATACGCTCCTCAACAGGGTAGTCTACGTAC
GGTTCGTTGCAGTCCCGTCGTCCGTTTTTACCGACTGTGCAATCCGGATT
GGTGCTCGCATCCCACTCACCCAGGCGTACTCCCGTCAGCTCCCAATCAC
TGGGAATAGCCGAGACGCAGTGTGCCGCCGTCAGAACGTAACGATGGTTG
ATTAGAGATCCGCCGCAGTGGTGACCTTTCACGTTACCGGGCTTCGTGTA
CTCTATTAGGGCCATCCAAGGAAACTCCCTCTTTGTCGTCTCGTTACCAC
CCACCACTCG
MXO02334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1102-PA | 1173 | CG1102-RA | 379..1170 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MP1-RC | 1495 | CG1102-RC | 485..1276 | 810..19 | 3960 | 100 | Minus |
| MP1-RA | 1468 | CG1102-RA | 458..1249 | 810..19 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4308895..4309616 | 740..19 | 3610 | 100 | Minus |
| 3R | 32079331 | 3R | 4308764..4308833 | 810..741 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:33:41 has no hits.
MXO02334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:28 Download gff for
MXO02334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1102-PA | 379..1173 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:14 Download gff for
MXO02334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 458..1256 | 11..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:27 Download gff for
MXO02334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 458..1256 | 11..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:27 Download gff for
MXO02334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4308764..4308833 | 741..810 | 100 | -> | Minus |
| 3R | 4308895..4309613 | 22..740 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:14 Download gff for
MXO02334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 134486..134555 | 741..810 | 100 | -> | Minus |
| arm_3R | 134617..135335 | 22..740 | 100 | -> | Minus |
MXO02334.5prime Sequence
783 bp (782 high quality bases) assembled on 2007-01-19
> MXO02334.5prime
CAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGATGCTATTG
ATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTATTGTAGAAC
GCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATGTGGATACC
TATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACCGTCGATTT
CTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTTATTTGCTG
TGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAATCATCCTC
AACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCAAACTGTTA
CCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTGGTGGGTGG
TAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAATAGAGTACA
CGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTCTAATCAAC
CATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATTCCCAGTGA
TTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAGCACCAATC
CGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACGAACCGTAC
GTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTACCCGGGAAA
CTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCGGGACGAGG
TTCAGTACAGCGACTTCATATTACCAGTATGTC
MXO02334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1102-PA | 1173 | CG1102-RA | 1..775 | 9..783 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MP1-RA | 1468 | CG1102-RA | 79..854 | 8..783 | 3880 | 100 | Plus |
| MP1-RC | 1495 | CG1102-RC | 340..881 | 242..783 | 2710 | 100 | Plus |
| MP1-RC | 1495 | CG1102-RC | 79..313 | 8..242 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4308895..4309221 | 457..783 | 1635 | 100 | Plus |
| 3R | 32079331 | 3R | 4308620..4308833 | 243..456 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 4308262..4308427 | 77..242 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 4307986..4308056 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:01 has no hits.
MXO02334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:28 Download gff for
MXO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1102-PA | 1..775 | 9..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:45 Download gff for
MXO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 79..854 | 8..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:48 Download gff for
MXO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MP1-RA | 79..854 | 8..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:48 Download gff for
MXO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4308895..4309221 | 457..783 | 100 | | Plus |
| 3R | 4307986..4308056 | 8..78 | 100 | -> | Plus |
| 3R | 4308264..4308427 | 79..242 | 100 | -> | Plus |
| 3R | 4308620..4308833 | 243..456 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:45 Download gff for
MXO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 133708..133778 | 8..78 | 100 | -> | Plus |
| arm_3R | 133986..134149 | 79..242 | 100 | -> | Plus |
| arm_3R | 134342..134555 | 243..456 | 100 | -> | Plus |
| arm_3R | 134617..134943 | 457..783 | 100 | | Plus |
