MXO02335.3prime Sequence
746 bp (742 high quality bases) assembled on 2007-01-19
> MXO02335.3prime
ATGGTCTAGAAAGCTTGCTATGTAAAGTGAGCCATCCGCTGGCCCCAAAT
AATGCATCGAGATGAGCAGGACATCGATGATGGTCCAGACGCCGAGGCCG
CCAAAGCTGAACAGCTTTCCAATCCCTTCCTGCCAGTGGCCCAAGTAGAA
TCGATCGGCTCCAAAGCCCCCTAGCGTGAGGCTAATCAGCAGGGCTGTGC
TCCACCGATAGCCCTGCGTCCAGTTGCATCGCAGGTTGCGGGTAAAGGAT
CGATTGCCGAGGCAGAGCACATCATGGTGCACGGTGCAGTTGGTACGGAA
TAGCTTATCCGTCGCCGAGTTGCAACTGGAGCGCTGGCCACAGCTCTGTT
GCCACATTTCCGTTTGGTAGCAGTATCGGCAATTCATTTGTCGCTGGAAA
CTCCGTTCGCCCAGGCACTGGACATTGTTGATCACCTCGCAGGTTACATT
CAAGTCCCGGCCGTAGATGCATCCATGATTGTAGTTGCAACGGATGCAGG
GAAACTGCAGGCGATCACAGGGCGTTTCCTTATCGTACGGGCATAGCATG
TTGTTGTTCCCATTGCTGCTACTGCTACTGCTGCTGCTGCTGTAGGCGGT
TATGTTGTCCAGGAGTCCACCGGCACCTCCTCCACTCTTGGCCACCATGC
TGGACACCAGGGGCGGCACATACACCTCGTTATCGTTGGCATTTCCATTG
CCATTGCTCGCATTGCTGTTATCCTTGTGATCGCCTTTTGAGTCCG
MXO02335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12127-PA | 855 | amx-RA | 125..852 | 746..19 | 3640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 1211 | CG12127-RB | 189..916 | 746..19 | 3640 | 100 | Minus |
| amx-RA | 1422 | CG12127-RA | 400..1127 | 746..19 | 3640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9246210..9246937 | 19..746 | 3640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 607..548 | 120 | 66.7 | Minus |
MXO02335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:29 Download gff for
MXO02335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12127-PA | 125..855 | 18..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:32 Download gff for
MXO02335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 400..1133 | 10..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:15 Download gff for
MXO02335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 400..1133 | 10..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:15 Download gff for
MXO02335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9246204..9246937 | 10..746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:32 Download gff for
MXO02335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9140237..9140970 | 10..746 | 99 | | Plus |
MXO02335.5prime Sequence
322 bp (321 high quality bases) assembled on 2007-01-19
> MXO02335.5prime
CAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACATGCGATCG
GCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGGAACAGCGA
AACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAAAGGCGATC
ACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCAACGATAAC
GAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAGAGTGGAGG
AGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAGCAGCAGCA
GTAGCAGTAGCAGCAATGGGAA
MXO02335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12127-PA | 855 | amx-RA | 1..314 | 9..322 | 1570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 1211 | CG12127-RB | 65..378 | 9..322 | 1570 | 100 | Plus |
| amx-RA | 1422 | CG12127-RA | 276..589 | 9..322 | 1570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9246748..9247061 | 322..9 | 1570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:39 has no hits.
MXO02335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:29 Download gff for
MXO02335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12127-PA | 1..312 | 9..320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:49 Download gff for
MXO02335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..589 | 9..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:42 Download gff for
MXO02335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..589 | 9..322 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:42 Download gff for
MXO02335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9246748..9247061 | 9..322 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:49 Download gff for
MXO02335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9140781..9141094 | 9..322 | 100 | | Minus |
