MXO02336.3prime Sequence
665 bp (662 high quality bases) assembled on 2007-01-19
> MXO02336.3prime
ATGGTCTAGAAAGCTTGCTTCCTCCTTGTTCTCGGCAGCCGGAACTTCCC
AGTAGTGCTCGTCCTGGTGATGTTCGTCCTTCTTCAGGTTCCGGAAGTTG
GTGTACTTCAAAACGGCACCTGTCAAAATACCACCTCCGATGGCAATGAG
CAGTGTGACAGCGATGCCAAACAATTGGTAGCCCGCCTGCGAAGTAGCGT
TCCGGCCAAGACCGCCCATGATTTTGGTCTCGGTTCCGTTGGTGCCCACC
ATGGCCGGGAAAATGTCCTGCAGCTCGGATTGGTACTCGCCCACGGTGGC
CATCGAGGCGTAAATGGCGGAGGCAATGGCCGAAATCAGGGCAGGCATTC
CGTGCAGGTTGTGCACGCCACAGGTGTCGTGCAGCCTCAGATTGGCCGTC
ATCCAGGGTGTTAAATAGCGATAGCCGAGCACCGAGACCGTGCCGGCGAT
AATGCCAATTAAGACAGCTCCGTGGGCGCCGAGCAGCAAGTTGCACACCG
TGCCCACGGCAACTCCGCCGGCGAGGGTCGAGTTCTGCACGTGCACCATG
TCCAATTTATTCTCGTGGCTGACAAGCGCGGATACAACGAAGGTGGTCAC
TGTTGCCGCGGCTAATGACAGGAACGTGTTCAAAATGGCCCGCTCGCCGC
CGGCTCCGTCGGCCA
MXO02336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7499-PA | 1350 | Rh50-RA | 701..1347 | 665..19 | 3235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1974 | CG7499-RC | 1027..1673 | 665..19 | 3235 | 100 | Minus |
Rh50-RB | 2773 | CG7499-RB | 1027..1673 | 665..19 | 3235 | 100 | Minus |
Rh50-RA | 1836 | CG7499-RA | 1027..1673 | 665..19 | 3235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4918320..4918515 | 408..213 | 980 | 100 | Minus |
3L | 28110227 | 3L | 4917454..4917647 | 602..409 | 970 | 100 | Minus |
3L | 28110227 | 3L | 4918755..4918859 | 123..19 | 525 | 100 | Minus |
3L | 28110227 | 3L | 4918596..4918691 | 213..118 | 480 | 100 | Minus |
3L | 28110227 | 3L | 4913891..4913956 | 665..600 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:27 has no hits.
MXO02336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:30 Download gff for
MXO02336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7499-PA | 702..1350 | 18..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:33 Download gff for
MXO02336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 1028..1678 | 11..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:02 Download gff for
MXO02336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 1028..1678 | 11..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:02 Download gff for
MXO02336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4917457..4917647 | 409..599 | 100 | -> | Minus |
3L | 4918320..4918514 | 214..408 | 100 | -> | Minus |
3L | 4918596..4918689 | 120..213 | 100 | -> | Minus |
3L | 4918759..4918864 | 11..119 | 96 | | Minus |
3L | 4913892..4913956 | 600..664 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:33 Download gff for
MXO02336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4918320..4918514 | 214..408 | 100 | -> | Minus |
arm_3L | 4918596..4918689 | 120..213 | 100 | -> | Minus |
arm_3L | 4918759..4918864 | 11..119 | 96 | | Minus |
arm_3L | 4913892..4913956 | 600..664 | 100 | -> | Minus |
arm_3L | 4917457..4917647 | 409..599 | 100 | -> | Minus |
MXO02336.5prime Sequence
689 bp (672 high quality bases) assembled on 2007-01-19
> MXO02336.5prime
CAGTCGACATGCATTCGCCGGCTGCCCCAGTGTCGGGCTACGTCGTCCTG
ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA
CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG
CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG
ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA
CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG
CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC
TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT
AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA
TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT
CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT
TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG
ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC
TTCGCCATGATCGGCACCACCTCTGGTGATGCACTTATC
MXO02336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7499-PA | 1350 | Rh50-RA | 1..664 | 9..672 | 3270 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1974 | CG7499-RC | 326..990 | 8..672 | 3295 | 99.7 | Plus |
Rh50-RB | 2773 | CG7499-RB | 326..990 | 8..672 | 3295 | 99.7 | Plus |
Rh50-RA | 1836 | CG7499-RA | 326..990 | 8..672 | 3295 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4912672..4912840 | 178..346 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4913451..4913619 | 344..512 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4910693..4910862 | 8..177 | 820 | 98.8 | Plus |
3L | 28110227 | 3L | 4913695..4913854 | 513..672 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 444..500 | 114 | 66.7 | Plus |
MXO02336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:30 Download gff for
MXO02336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7499-PA | 1..671 | 9..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:42 Download gff for
MXO02336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 323..997 | 1..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:44 Download gff for
MXO02336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 323..997 | 1..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:44 Download gff for
MXO02336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4910690..4910862 | 1..177 | 96 | -> | Plus |
3L | 4912672..4912840 | 178..346 | 100 | -> | Plus |
3L | 4913454..4913619 | 347..512 | 100 | -> | Plus |
3L | 4913695..4913861 | 513..681 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:42 Download gff for
MXO02336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4910690..4910862 | 1..177 | 96 | -> | Plus |
arm_3L | 4912672..4912840 | 178..346 | 100 | -> | Plus |
arm_3L | 4913454..4913619 | 347..512 | 100 | -> | Plus |
arm_3L | 4913695..4913861 | 513..681 | 97 | | Plus |