Clone MXO02336 Report

Search the DGRC for MXO02336

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:23
Well:36
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRh50-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02336.3prime Sequence

665 bp (662 high quality bases) assembled on 2007-01-19

> MXO02336.3prime
ATGGTCTAGAAAGCTTGCTTCCTCCTTGTTCTCGGCAGCCGGAACTTCCC
AGTAGTGCTCGTCCTGGTGATGTTCGTCCTTCTTCAGGTTCCGGAAGTTG
GTGTACTTCAAAACGGCACCTGTCAAAATACCACCTCCGATGGCAATGAG
CAGTGTGACAGCGATGCCAAACAATTGGTAGCCCGCCTGCGAAGTAGCGT
TCCGGCCAAGACCGCCCATGATTTTGGTCTCGGTTCCGTTGGTGCCCACC
ATGGCCGGGAAAATGTCCTGCAGCTCGGATTGGTACTCGCCCACGGTGGC
CATCGAGGCGTAAATGGCGGAGGCAATGGCCGAAATCAGGGCAGGCATTC
CGTGCAGGTTGTGCACGCCACAGGTGTCGTGCAGCCTCAGATTGGCCGTC
ATCCAGGGTGTTAAATAGCGATAGCCGAGCACCGAGACCGTGCCGGCGAT
AATGCCAATTAAGACAGCTCCGTGGGCGCCGAGCAGCAAGTTGCACACCG
TGCCCACGGCAACTCCGCCGGCGAGGGTCGAGTTCTGCACGTGCACCATG
TCCAATTTATTCTCGTGGCTGACAAGCGCGGATACAACGAAGGTGGTCAC
TGTTGCCGCGGCTAATGACAGGAACGTGTTCAAAATGGCCCGCTCGCCGC
CGGCTCCGTCGGCCA

MXO02336.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7499-PA 1350 Rh50-RA 701..1347 665..19 3235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1974 CG7499-RC 1027..1673 665..19 3235 100 Minus
Rh50-RB 2773 CG7499-RB 1027..1673 665..19 3235 100 Minus
Rh50-RA 1836 CG7499-RA 1027..1673 665..19 3235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4918320..4918515 408..213 980 100 Minus
3L 28110227 3L 4917454..4917647 602..409 970 100 Minus
3L 28110227 3L 4918755..4918859 123..19 525 100 Minus
3L 28110227 3L 4918596..4918691 213..118 480 100 Minus
3L 28110227 3L 4913891..4913956 665..600 330 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:16:27 has no hits.

MXO02336.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:30 Download gff for MXO02336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7499-PA 702..1350 18..664 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:33 Download gff for MXO02336.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1028..1678 11..664 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:02 Download gff for MXO02336.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1028..1678 11..664 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:02 Download gff for MXO02336.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4917457..4917647 409..599 100 -> Minus
3L 4918320..4918514 214..408 100 -> Minus
3L 4918596..4918689 120..213 100 -> Minus
3L 4918759..4918864 11..119 96   Minus
3L 4913892..4913956 600..664 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:33 Download gff for MXO02336.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4918320..4918514 214..408 100 -> Minus
arm_3L 4918596..4918689 120..213 100 -> Minus
arm_3L 4918759..4918864 11..119 96   Minus
arm_3L 4913892..4913956 600..664 100 -> Minus
arm_3L 4917457..4917647 409..599 100 -> Minus

MXO02336.5prime Sequence

689 bp (672 high quality bases) assembled on 2007-01-19

> MXO02336.5prime
CAGTCGACATGCATTCGCCGGCTGCCCCAGTGTCGGGCTACGTCGTCCTG
ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA
CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG
CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG
ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA
CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG
CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC
TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT
AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA
TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT
CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT
TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG
ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC
TTCGCCATGATCGGCACCACCTCTGGTGATGCACTTATC

MXO02336.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7499-PA 1350 Rh50-RA 1..664 9..672 3270 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1974 CG7499-RC 326..990 8..672 3295 99.7 Plus
Rh50-RB 2773 CG7499-RB 326..990 8..672 3295 99.7 Plus
Rh50-RA 1836 CG7499-RA 326..990 8..672 3295 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4912672..4912840 178..346 845 100 Plus
3L 28110227 3L 4913451..4913619 344..512 845 100 Plus
3L 28110227 3L 4910693..4910862 8..177 820 98.8 Plus
3L 28110227 3L 4913695..4913854 513..672 800 100 Plus
Blast to na_te.dros performed 2014-11-28 19:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 264..320 444..500 114 66.7 Plus

MXO02336.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:30 Download gff for MXO02336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7499-PA 1..671 9..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:42 Download gff for MXO02336.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 323..997 1..681 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:44 Download gff for MXO02336.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 323..997 1..681 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:44 Download gff for MXO02336.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4910690..4910862 1..177 96 -> Plus
3L 4912672..4912840 178..346 100 -> Plus
3L 4913454..4913619 347..512 100 -> Plus
3L 4913695..4913861 513..681 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:42 Download gff for MXO02336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4910690..4910862 1..177 96 -> Plus
arm_3L 4912672..4912840 178..346 100 -> Plus
arm_3L 4913454..4913619 347..512 100 -> Plus
arm_3L 4913695..4913861 513..681 97   Plus