MXO02343.3prime Sequence
625 bp (586 high quality bases) assembled on 2007-01-19
> MXO02343.3prime
ATGGTCTAGAAAGCTTGCGTCCTCCACCTTCTCCTGTTTGATTTTCGCAT
TTGTGGTCGCAGGATTATTGTCGCCGCCGGCACCGCCGCTGGACAGCCTA
CCGCTGCTGCCGCTATTCGACTGCTGCTGATGAGAGTTCAGGCCAGCGGA
GCTGGGTGGCTGCAGGGACGTTGACGCCGCGGAAGCTGCGCTGTTCGATG
TCGTGGCGCTGCCGCCGGCGGTGCGCCCACTAGAACGATTGGATTCGAGT
TCGTGCAGTTTCTTCCACAGTTCCTCGCGGTCACGCTCACGTTTTTTTTC
CTTTTGCCGCTCCGCCTTGTAGCTGGATGTAAGCTCGTCGAACCCCCCCG
AATTCGTCGCCAAGAAAGACTTCAAAATTTTTTCCCCCCCCCCCACGANA
GATTGACTCCCCCGAAAAAAGAAGAGGCGGTATAGGGCCGGGAACATGAT
CGGGATGATGACCGCATTGTTCTCCTCGATTAGCGACATGGCGAACTCAT
TGCTCCACAGATAAAGAGCTCGCTCAGCAACCCGAAAATGCGGACTCGAC
ACCCCATGTTGCAAACTGACGGAATAGCGGCTCCCGAATCCTGACAACTG
CCGCGGAACGATCACATCGAGGAAC
MXO02343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5643-PB | 1575 | wdb-RB | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PD | 1575 | wdb-RD | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PF | 1575 | wdb-RF | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PG | 1575 | wdb-RG | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PA | 1575 | wdb-RA | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PC | 1575 | wdb-RC | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PE | 1575 | wdb-RE | 1248..1559 | 343..32 | 1510 | 99.3 | Minus |
| CG5643-PB | 1575 | wdb-RB | 1039..1164 | 552..427 | 505 | 96 | Minus |
| CG5643-PD | 1575 | wdb-RD | 1039..1164 | 552..427 | 505 | 96 | Minus |
| CG5643-PF | 1575 | wdb-RF | 1039..1164 | 552..427 | 505 | 96 | Minus |
| CG5643-PG | 1575 | wdb-RG | 1039..1164 | 552..427 | 505 | 96 | Minus |
| CG5643-PA | 1575 | wdb-RA | 1039..1164 | 552..427 | 505 | 96 | Minus |
| CG5643-PC | 1575 | wdb-RC | 1039..1164 | 552..427 | 505 | 96 | Minus |
| CG5643-PE | 1575 | wdb-RE | 1039..1164 | 552..427 | 505 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdb-RF | 7086 | CG5643-RF | 2585..3185 | 623..23 | 2199 | 91.2 | Minus |
| wdb-RE | 3635 | CG5643-RE | 2501..3101 | 623..23 | 2199 | 91.2 | Minus |
| wdb-RC | 6833 | CG5643-RC | 2332..2932 | 623..23 | 2199 | 91.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27565576..27565854 | 23..301 | 1350 | 98.9 | Plus |
| 3R | 32079331 | 3R | 27565917..27566152 | 301..536 | 584 | 83.1 | Plus |
| 3R | 32079331 | 3R | 27566205..27566298 | 530..623 | 240 | 88.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:16 has no hits.
MXO02343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:32 Download gff for
MXO02343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5643-PF | 1248..1572 | 19..343 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:47 Download gff for
MXO02343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RC | 2612..2936 | 19..343 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:49 Download gff for
MXO02343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RC | 2612..2936 | 19..343 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:49 Download gff for
MXO02343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27565572..27565854 | 19..301 | 98 | <- | Plus |
| 3R | 27565918..27565959 | 302..343 | 97 | == | Plus |
| 3R | 27566043..27566147 | 427..531 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:47 Download gff for
MXO02343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23391294..23391576 | 19..301 | 98 | <- | Plus |
| arm_3R | 23391640..23391681 | 302..343 | 97 | == | Plus |
| arm_3R | 23391765..23391869 | 427..531 | 97 | <- | Plus |
MXO02343.5prime Sequence
347 bp (345 high quality bases) assembled on 2007-01-19
> MXO02343.5prime
CAGTCGACATGTCATCGGGCACGTTTCCGGATCGAATCGACCCGTTCGCC
AAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCCTCGCGCTA
CACCAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCTGAAAGCTG
ATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGCTGCGCCAG
TGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTGAAGGGCAA
GGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATATAACACATG
GGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTCGTATG
MXO02343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5643-PB | 1575 | wdb-RB | 1..339 | 9..347 | 1595 | 98.8 | Plus |
| CG5643-PD | 1575 | wdb-RD | 1..339 | 9..347 | 1595 | 98.8 | Plus |
| CG5643-PF | 1575 | wdb-RF | 1..339 | 9..347 | 1595 | 98.8 | Plus |
| CG5643-PG | 1575 | wdb-RG | 1..339 | 9..347 | 1595 | 98.8 | Plus |
| CG5643-PA | 1575 | wdb-RA | 1..339 | 9..347 | 1595 | 98.8 | Plus |
| CG5643-PC | 1575 | wdb-RC | 1..339 | 9..347 | 1595 | 98.8 | Plus |
| CG5643-PE | 1575 | wdb-RE | 1..339 | 9..347 | 1595 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdb-RF | 7086 | CG5643-RF | 1618..1956 | 9..347 | 1635 | 98.8 | Plus |
| wdb-RE | 3635 | CG5643-RE | 1534..1872 | 9..347 | 1635 | 98.8 | Plus |
| wdb-RC | 6833 | CG5643-RC | 1365..1703 | 9..347 | 1635 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27567152..27567353 | 347..146 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 27567412..27567554 | 151..9 | 640 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:10 has no hits.
MXO02343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:19:33 Download gff for
MXO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5643-PE | 1..339 | 9..347 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:51 Download gff for
MXO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RC | 1365..1703 | 9..347 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:32 Download gff for
MXO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdb-RC | 1365..1703 | 9..347 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:32 Download gff for
MXO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27567152..27567351 | 148..347 | 100 | <- | Minus |
| 3R | 27567416..27567554 | 9..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:51 Download gff for
MXO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23393138..23393276 | 9..147 | 97 | | Minus |
| arm_3R | 23392874..23393073 | 148..347 | 100 | <- | Minus |
